Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10607 87.8 2e-12 seq4474 87.8 2e-12 >seq10607 Length=2140885 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 76483 GAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAAT 76542 ||| ||| | |||||||||||| || | ||||| ||||| || || ||||| || ||||| Sbjct 829849 GAATGGTATCCGTAACAGTCTTCTGCTTGCACCGATGCCCACCGCTTCCACAGCCCAAAT 829790 Query 76543 CTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTAC 76588 ||||||||||||| | | |||| |||||||| | || ||||| Sbjct 829789 TCTGGGTAATAATGAGTCCATTGAGCCATACACTAGCAATTTCTAC 829744 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 75875 GTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAG 75934 || ||| | |||||| | | || ||||| |||||||| || || || ||||||||||| Sbjct 830925 GTGTGGTATGCTATTATTGAGTCTCAGACTGAGACTGGCACTCCCTACATGCTTTACAAA 830866 Query 75935 GATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTT 75994 ||||| || || | |||||| ||||| |||| | || || || || || ||| | Sbjct 830865 GATGCCTGCAATAGGAAGAGCAACCAGCAGAACCTCGGCACCATTAAATGCAGCAATTTG 830806 Query 75995 TGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 || || || ||| | ||||| ||| ||||||||| Sbjct 830805 TGTACAGAGATTGTGGAGTATACAAGCAAGGATGAG 830770 >seq4474 Length=14602 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 65441 AGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCTTTGAGA 65500 ||||||| |||||||| ||||| |||||| | | || |||||||||||||||||||| | Sbjct 6013 AGAATCCCTTTGACTTCATGGAGAACATTTCCTTGGAGGGGAAGACCAACTTCTTTGAAA 6072 Query 65501 AGCGAGTTGGGGACTA 65516 |||||||||| || || Sbjct 6073 AGCGAGTTGGCGAGTA 6088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596489547816800