Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq10555 87.8 4e-12 >seq10555 Length=3328687 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || || || || | || ||| |||| |||| || |||||||||||||| | | Sbjct 3315255 GATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACG 3315314 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || ||||| ||||| || ||||| || |||||| || ||||| || | Sbjct 3315315 CTGCTGGTCGGGTGGGATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGT 3315374 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 || | || ||||| ||||| ||||| |||||||| | || || | || ||||| Sbjct 3315375 GTCACTTGGCTCCACTTCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCACGAAGATCTG 3315434 Query 192534 CAT 192536 ||| Sbjct 3315435 CAT 3315437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984344592467250