Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq71 89.7 2e-12 >seq71 Length=1164749 Score = 89.7 bits (98), Expect = 2e-12 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 ||||| |||||||| ||||| ||||| | | || ||||| || |||||||| | ||| Sbjct 1040157 GTTTTCACAGCTGTGTCAATGAGACCCTCTCTTCCTCCCATGGCGTGGAAGAAAAACTCA 1040098 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCG 302739 ||| || || | | | ||| |||| || || || | ||| || | | Sbjct 1040097 GTAGGTGTGAGTCCGGCCAGGTAAGAGTTCTCCACAAACCCTCTGCTCTCAGGACCGTAG 1040038 Query 302740 TCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCA 302799 ||| ||| | ||||| || || |||| || || | ||||| | ||||||||||| || Sbjct 1040037 TCGTCTTTGATGAAGTGAGGAAGAGTCCGGTGCTTAAAGCCGAAAGGGATACGCTTACCC 1039978 Query 302800 TCAACGTTCTGCTGTCCCA 302818 |||||||||||||| |||| Sbjct 1039977 TCAACGTTCTGCTGCCCCA 1039959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471615162987695