Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq466 149 8e-30 seq10646 147 3e-29 seq237 95.1 1e-13 >seq466 Length=309202 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||||||||||||||| | | | || Sbjct 47282 GCTTGGCCAGCTCGCCGGGCAGAAGCAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 47223 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| ||||| ||| | ||| | |||| || |||| | Sbjct 47222 TGGTGGAACGCTTGTTGTAGTGAGCCAGGCGGGAAGACTCTCCGGCGATTCGCTCGAAAA 47163 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||||| ||| |||| Sbjct 47162 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCTGGGT 47103 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| || || ||||| Sbjct 47102 GCACCTGCTTCAGGACTTTGTA 47081 >seq10646 Length=1799187 Score = 147 bits (162), Expect = 3e-29 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||||||||||||||| | | | || Sbjct 1563158 GCTTGGCCAGCTCGCCGGGCAGAAGCAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 1563099 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| ||||| ||| | ||| | ||||||| |||| | Sbjct 1563098 TGGTGGAACGCTTGTTGTAGTGAGCCAGGCGGGAAGACTCACCGGCGATGCGCTCGAAGA 1563039 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||||| ||| |||||| || |||||||| Sbjct 1563038 TGTCGTTCACGAAGGAGTTCATGATACCCATCGCCTTTGAGGAGATTCCGGTGTCGGGGT 1562979 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| | ||||||||||| Sbjct 1562978 GGACCTGCTTCAACACCTTGTAGA 1562955 >seq237 Length=550808 Score = 95.1 bits (104), Expect = 1e-13 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | || || ||||||||||| | ||| || | || Sbjct 361471 GCTTGGCCAGCTCCCCGGGCAGCAGAAGCCGGACGGCGGTCTGCACCTCACGGCTAGTGA 361530 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || | ||| | |||||||||| | |||||||||| || Sbjct 361531 TGGTCGAGCGCTTGTTGTATTGGGTCAGTCTCGAGGCCTCGGTGGCAATGCGGTCGAACA 361590 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 || || || || |||||||||| ||| | | || |||||||||| ||| |||| Sbjct 361591 CATCATTAACGAAGGAGTTCATGATGCTCATGGCCCTGCTGGAGATGCCAGTGTCTGGGT 361650 Query 1254523 GCACCTG 1254529 | ||||| Sbjct 361651 GGACCTG 361657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106258235627995