Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq466 149 8e-30
seq10646 147 3e-29
seq237 95.1 1e-13
>seq466
Length=309202
Score = 149 bits (164), Expect = 8e-30
Identities = 154/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||||||||||||||| | | | ||
Sbjct 47282 GCTTGGCCAGCTCGCCGGGCAGAAGCAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 47223
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| |||||||| |||| ||||| ||| | ||| | |||| || |||| |
Sbjct 47222 TGGTGGAACGCTTGTTGTAGTGAGCCAGGCGGGAAGACTCTCCGGCGATTCGCTCGAAAA 47163
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|||||||||| || |||||||||| ||| | |||| |||||||||| ||| ||||
Sbjct 47162 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCTGGGT 47103
Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544
|||||||||| || || |||||
Sbjct 47102 GCACCTGCTTCAGGACTTTGTA 47081
>seq10646
Length=1799187
Score = 147 bits (162), Expect = 3e-29
Identities = 155/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| |||||| ||| | |||||||||||||||||||||||| | | | ||
Sbjct 1563158 GCTTGGCCAGCTCGCCGGGCAGAAGCAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 1563099
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| ||| |||||||| |||| ||||| ||| | ||| | ||||||| |||| |
Sbjct 1563098 TGGTGGAACGCTTGTTGTAGTGAGCCAGGCGGGAAGACTCACCGGCGATGCGCTCGAAGA 1563039
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||| || || |||||||||| ||||| ||| |||||| || ||||||||
Sbjct 1563038 TGTCGTTCACGAAGGAGTTCATGATACCCATCGCCTTTGAGGAGATTCCGGTGTCGGGGT 1562979
Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546
| |||||||| | |||||||||||
Sbjct 1562978 GGACCTGCTTCAACACCTTGTAGA 1562955
>seq237
Length=550808
Score = 95.1 bits (104), Expect = 1e-13
Identities = 133/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| || ||| ||| | || || ||||||||||| | ||| || | ||
Sbjct 361471 GCTTGGCCAGCTCCCCGGGCAGCAGAAGCCGGACGGCGGTCTGCACCTCACGGCTAGTGA 361530
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || ||||||||| | || | ||| | |||||||||| | |||||||||| ||
Sbjct 361531 TGGTCGAGCGCTTGTTGTATTGGGTCAGTCTCGAGGCCTCGGTGGCAATGCGGTCGAACA 361590
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
|| || || || |||||||||| ||| | | || |||||||||| ||| ||||
Sbjct 361591 CATCATTAACGAAGGAGTTCATGATGCTCATGGCCCTGCTGGAGATGCCAGTGTCTGGGT 361650
Query 1254523 GCACCTG 1254529
| |||||
Sbjct 361651 GGACCTG 361657
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106258235627995
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |