Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq183 129 5e-25 seq10555 114 1e-20 >seq183 Length=784777 Score = 129 bits (142), Expect = 5e-25 Identities = 161/219 (74%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || ||||| || || || || || || || || | | | Sbjct 331856 ATGCAGATCTTCGTAAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 331797 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||||||||||||||| || || || || ||||| Sbjct 331796 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCCCAGATCAG 331737 Query 24824 CA-ACGTT---TGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTA 24879 || | ||| ||||||||||||| ||||||||||| ||| | | | | |||| || || Sbjct 331736 CAGAGGTTGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTA 331677 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| || ||||| || || || ||| ||||| |||| Sbjct 331676 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCG 331638 Score = 120 bits (132), Expect = 3e-22 Identities = 152/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || || | | | Sbjct 332084 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC 332025 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||||||||| || || || ||||| Sbjct 332024 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 331965 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||||||| ||||||||||| ||| | | | | |||| || || ||| Sbjct 331964 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 331905 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || ||||| || || || |||| Sbjct 331904 ATCCAGAAAGAATCCACCCTGCATCTTG 331877 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | || || || || || || || || || || || || || | | Sbjct 332312 ATGCAAATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGT 332253 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| |||||||| ||||||||||| || || || || || Sbjct 332252 GACACAATTGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAG 332193 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||| || || || |||||||| ||| | | | |||| || || || Sbjct 332192 CAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCTTGTCCGACTACAAT 332133 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 || || || || || || || || |||| Sbjct 332132 ATCCAGAAAGAGTCCACTCTCCATCTTG 332105 >seq10555 Length=3328687 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || |||||||| || | | Sbjct 3315893 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315834 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| || || ||||| || |||||||| || Sbjct 3315833 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 3315774 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || || |||||||| ||| | | | |||| || || ||| Sbjct 3315773 CAGCGTTTGATCTTCGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3315714 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||| || || || || Sbjct 3315713 ATCCAGAAGGAGTCCACCCTCCA 3315691 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || ||||| || ||||| || || || | || || || | | Sbjct 3318644 GATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCTTGGAGGTGGAGCCAAG 3318585 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || ||| ||||||||||| || || ||||| || ||||| || Sbjct 3318584 CGACACCATCGAGAACGTCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCCGACCA 3318525 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || |||||||| || | | | |||| || || || Sbjct 3318524 GCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTACAA 3318465 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| |||| | || || | ||||| Sbjct 3318464 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGTCTGAGGGGAGG 3318417 Score = 113 bits (124), Expect = 4e-20 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || ||||| || || || |||||||| || | | Sbjct 3315437 ATGCAGATCTTCGTGAAGACGCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315378 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || || ||||| || || || ||||| || ||||| || Sbjct 3315377 GACACCATTGAAAATGTGAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCCGACCAG 3315318 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| |||||||||| || || |||||||| ||| | | | |||| || || ||| Sbjct 3315317 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3315258 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGA 24939 || || ||||| || || || || | || |||| | || || ||| |||||| Sbjct 3315257 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCGTCTCCGTGGCGGC--AACTGA 3315204 Score = 102 bits (112), Expect = 7e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||| || || || | || || ||| ||| | Sbjct 3315665 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCTTGGAGGTGGAACCCAGC 3315606 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||||||||| || || ||||| || || || || Sbjct 3315605 GACACTATTGAGAACGTCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCTGACCAG 3315546 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || ||| ||||||||||||| || ||||| || ||| Sbjct 3315545 CAGCGTCTGATCTTTGCCGGTAAGCAGCTTGAAGAT 3315510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449837229365800