Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq719 122 7e-23 seq10644 104 2e-17 >seq719 Length=4632863 Score = 122 bits (134), Expect = 7e-23 Identities = 131/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || || ||||| || |||||||| || || || | |||||||||||||||||| ||||| Sbjct 1849894 AGGTCGGTCTCGGGATTGTCACACTCGGGGCAAAGCACAAACTTGCGGATGAATCCATCC 1849953 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT-TTT 34433 |||| |||||||| || || |||||||||||||| || ||| |||| || || ||| Sbjct 1849954 AGCATGTCCTGTAGTTTGTTGGCCTCGTGGGAGCCGTTCACTATGTATCGGTCATTCTTT 1850013 Query 34434 GTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || || | ||| || ||||| |||| ||| || || || |||| || || Sbjct 1850014 GT-GTCAAACTGGGTCTGCGCCCCCAACTCACAGCCAAAAAACTTGGTTGG 1850063 >seq10644 Length=1840839 Score = 104 bits (114), Expect = 2e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 34318 TCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGC 34377 ||||| || || || ||||| || ||||||| |||||||||||| || |||||||| ||| Sbjct 237033 TCAGTTTCTGGATTATCACACTCAGGACACAGCACAAACTTGCGAATAAAACCATCCAGC 236974 Query 34378 AGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTGTAA 34437 | ||| || | || | ||||| ||||| ||||| ||| | || || || ||| | Sbjct 236973 ATGTCTTGCAGTTTGTTTGCCTCGTGAGAGCCATTGACAATGTAGCGGTCATTCTTGGCA 236914 Query 34438 TCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 || | ||| || || || |||| ||| || || ||| |||| || || Sbjct 236913 TCAAACTGAGTCTGGGCTCCCAACTCACAGCCAAAGAACTTGGTGGG 236867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412787586772355