Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq10646 203 5e-46 seq466 188 1e-41 seq237 132 8e-25 >seq10646 Length=1799187 Score = 203 bits (224), Expect = 5e-46 Identities = 190/242 (79%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 |||||||||||||||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 1563195 TACTTGGTGACGGCCTTGGTTCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCAGA 1563136 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | |||||||||||||||||||||||| | || | ||| ||| |||||||| | | Sbjct 1563135 AGCAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAACGCTTGTTGTAGTGA 1563076 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 ||||||||| | ||| | ||||||| |||| |||||||| || || ||||||||| Sbjct 1563075 GCCAGGCGGGAAGACTCACCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCATG 1563016 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||||| || |||||| || ||||||||| |||||||| | ||||||||| Sbjct 1563015 ATACCCATCGCCTTTGAGGAGATTCCGGTGTCGGGGTGGACCTGCTTCAACACCTTGTAG 1562956 Query 1485712 AC 1485713 || Sbjct 1562955 AC 1562954 >seq466 Length=309202 Score = 188 bits (208), Expect = 1e-41 Identities = 188/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || |||||||| || || || ||||||||| ||||||| |||||| ||| Sbjct 47321 TGTACTTTGTCACTGCCTTGGTGCCTTCAGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 47262 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||||||||||||||||||||| | || | ||| ||| |||||||| | Sbjct 47261 GAAGCAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAACGCTTGTTGTAGT 47202 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| | ||| | |||| || |||| ||||||||||| || ||||||| Sbjct 47201 GAGCCAGGCGGGAAGACTCTCCGGCGATTCGCTCGAAAATGTCGTTGACGAAGGAGTTCA 47142 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||||| ||| |||||||||||||| || || |||| Sbjct 47141 TGATGCCCATGGCCTTGGAGGAGATGCCCGTGTCTGGGTGCACCTGCTTCAGGACTTTGT 47082 Query 1485710 AAAC 1485713 | || Sbjct 47081 ACAC 47078 >seq237 Length=550808 Score = 132 bits (146), Expect = 8e-25 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || || || ||| ||||||| || ||| ||| Sbjct 361432 TGTACTTGGTGACTGCCTTGGTCCCCTCAGACACTGCATGCTTGGCCAGCTCCCCGGGCA 361491 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||||||||| | ||| ||| | ||| || ||||||||| Sbjct 361492 GCAGAAGCCGGACGGCGGTCTGCACCTCACGGCTAGTGATGGTCGAGCGCTTGTTGTATT 361551 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | | ||| | |||||||||| | |||||||||| || || || || || ||||||| Sbjct 361552 GGGTCAGTCTCGAGGCCTCGGTGGCAATGCGGTCGAACACATCATTAACGAAGGAGTTCA 361611 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 |||| ||| | || |||||||||| ||| ||||| ||||| Sbjct 361612 TGATGCTCATGGCCCTGCTGGAGATGCCAGTGTCTGGGTGGACCTG 361657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915104469087665