Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq183 129 5e-25 >seq183 Length=784777 Score = 129 bits (142), Expect = 5e-25 Identities = 169/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 ||||| ||||| | ||||||||||| || || ||||| || || || ||||| || || Sbjct 331623 TGTCCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCA 331682 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATC----TTTGCTGATC 29672 | | |||||| ||| || || |||||||| ||| | ||||| | | |||||||| Sbjct 331683 GACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATC 331742 Query 29673 CGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAG 29732 || ||||| |||||||||||||| | || ||||||| | || | ||||| | Sbjct 331743 TGGGGGAATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTTGG 331802 Query 29733 TTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||| || || || ||||| || | ||| || || || |||||||| Sbjct 331803 CTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||||| | ||| || || | ||| || ||||||||||| || ||||| || || | Sbjct 331858 CCTCCCCTGAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 331917 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || |||||||| ||| | ||||| || |||||||| || ||| Sbjct 331918 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 331977 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | || || || | || | ||||| | || || Sbjct 331978 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACC 332037 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| | ||| || || || |||||||| Sbjct 332038 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 332084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385168800688635