Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq167 242 3e-58
seq10671 107 1e-17
seq592 98.7 7e-15
>seq167
Length=797236
Score = 242 bits (268), Expect = 3e-58
Identities = 941/1463 (64%), Gaps = 22/1463 (2%)
Strand=Plus/Plus
Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484
||||| || || || || || ||||| || | ||| || ||||| || || ||||| ||
Sbjct 617843 GGCAGAAACGTTCAGGATGCCGTTGGCGTCGATATCGAAGGTGACCTCGATCTGAGGTAC 617902
Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544
|| | | ||||| || || ||| | | ||| | || || || || |||||
Sbjct 617903 ACCCCGTGGTGCAGGGGGAATACCTGTGAGTTCAAACTTGCCGAGGAGGTTGTTGTCTTT 617962
Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604
|| | ||| || || ||| | | |||||| ||| | | || || || || ||
Sbjct 617963 GGTCATGGCTCGCTCCCCTTCGTAGACTTGGATCAGCACTCCTGGCTGGTTGTCGGAGTA 618022
Query 281605 AGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663
||| | || | |||| | | ||| || || || || || | | || | ||
Sbjct 618023 AGTGGAGAAAA-TCTGCGTCTGTTTGTTGGGGATGGTGGTATTGCGCTTGATGAGGGCGG 618081
Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA-CA 281722
|||||| || || || || || | ||| || || || || | ||||| | |||| ||
Sbjct 618082 TCATAACTCCTCCGGCGGTCTCAATACCCAGTGACAGCGGTGCCACATCCAGCAGGAGCA 618141
Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782
| | || ||||| | | || | ||| | ||||| || || || | || || ||
Sbjct 618142 AGTCCTGGACGTTTTCCGAC-GTGTCACCCATGAGAATGGCGGCCTGCACTGCCGCGCCG 618200
Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842
|| || || ||||| || ||||| | | | || || | | ||||| || || | |
Sbjct 618201 TAAGCCACTGCTTCGTCTGGATTGATGCTCTTGTTGAGGTCCCTGCCATTAAAGAATTCT 618260
Query 281843 GAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901
||||||| ||| | ||| || || | | || || ||||| || ||||| || ||
Sbjct 618261 TGCAGAAGTT-TCTGGATCTTGGGGATTCTTGTGGAGCCACCAACCAACACAATATCGTG 618319
Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961
| ||| || ||||||| ||| | || ||| | || || || |||||||| |
Sbjct 618320 AATCTGGGACTTATCCATTTTGGCGTCTCTCAAAGCCTTCTCCACCGGTTCAAGGGTGCC 618379
Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 282021
|||||| | || || ||| || || || |||||| || | | | | ||||
Sbjct 618380 TCTAAAAAGCTCAGAGTTAAGCTCCTCAAAGCGAGCTCTGGTGATGGAGGTGTAGAAATC 618439
Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081
| || || ||| || || | ||||| | | |||| || || || | |
Sbjct 618440 TACACCCTCATACAGGGAGTCGATCTCAATGCTGGCCTGAGAGCTGGAGGACAGGGTTCT 618499
Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGATTCA 282137
|| || | || || |||||||| | || || | ||| || | |||| ||||
Sbjct 618500 CTTGGCTCTCTCGCAGGCTGTCCTCAACCTCCGGACGGCCCTCTTGTTCTGAGTGATG-- 618557
Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATC 282195
||| | || | || |||||||| || || ||| | |||| || | ||||| ||
Sbjct 618558 --TCTTTCTTGTGCTTCCTCTTGAACTCCTCCACAAAG--TGTTGGACCATGCGATTGTC 618613
Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255
||| ||||| || ||||| | ||| | ||| | || ||| | || | || | |||||
Sbjct 618614 AAAGTCTTCCCCACCCAAGTGAGTGTCTCCAGCTGTGGCTTTCACCTCAAAGATGCCATC 618673
Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315
|| | | || | || ||||||| ||| || || |||| ||||| || || |||||
Sbjct 618674 CTCGATGGTCAGGATAGAAACATCAAAGGTGCCTCCTCCCAAGTCAAAGATCAGGACATT 618733
Query 282316 CATTTCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374
| | || | ||||| || || ||||| || |||| || || || || || ||||
Sbjct 618734 CCTCTCGCCTCTCTTGCCCTTG-TCCAGACCGTAGGCAATGGCGGCTGCTGTGGGCTCAT 618792
Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434
| || ||||||| ||||| || |||||||| ||| |||||||| || || || || |
Sbjct 618793 TGATGATTCTCAGCACATTCAGTCCAGCAATCACTCCAGCATCTTTGGTCGCCTGCCTCT 618852
Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCTTTTCCAATA 282493
| || ||||| || || || || || || || ||||||| || ||| ||| |||| |
Sbjct 618853 GGGAGTCGTTGAAGTAAGCCGGGACTGTGATTACGGCATTGGTGACTCTCTGGCCCAA-A 618911
Query 282494 TAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAA 282553
|| || | | | ||||||| | | ||| || || || | || || ||
Sbjct 618912 TAGGCTTCAGAAATCTCCCTCATTTTCACAAGGACCATAGACGAGATCTCCTCAGGGTAA 618971
Query 282554 TATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 282613
| ||| || | || || || | | || || ||| || | ||
Sbjct 618972 AAGGTCTTCACCTCCCCCTTGTACTCCACCTCCACTTTCGGCTTGCCTCCATCACTGATC 619031
Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673
|||||||| ||||| |||||| ||||| ||||| ||||| ||| ||| |||
Sbjct 619032 ACTTTAAAGGGCCAGAGTTTCATGTCTGACTGAACCACAGCGTCATCAAACCTTCTGCCA 619091
Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733
|| | || |||||||||||||| || ||| | ||||| | || | || | ||||||
Sbjct 619092 ATCAGACGCTTTGCATCAAAAATGGTGTTGTTGGGATTCATGGCGACCTGGTTTTTGGCA 619151
Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793
|||||||| || || || || |||||||| | ||||| |||||||| | ||
Sbjct 619152 GCATCTCCGATGAGCCTCTCAGTGTCTGTAAACGCCACATAGCTGGGAGTTGTCCTGTTT 619211
Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 282853
|||||||| || ||||| ||||||||||| |||| || | ||||| ||||| |
Sbjct 619212 CCTTGATCGTTGGCAATGATTTCAACTTTGCCATGCTGGAAAACACCCACACAGGAGTAG 619271
Query 282854 GTTGTTCCTAAATCAATACCAAT 282876
|| ||||| | ||||| |||||
Sbjct 619272 GTAGTTCCAAGGTCAATTCCAAT 619294
>seq10671
Length=1829250
Score = 107 bits (118), Expect = 1e-17
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || ||||| || |||| |||||||||||||| ||||| || || | || ||||
Sbjct 1496628 TTTTTGTCCAGACCGTAAGCAATTGCAGCAGCAGTTGGCTCATTGATGATACGCAGAACA 1496687
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| || |||| || |||| ||||| ||||| || || | || |||||||| || ||
Sbjct 1496688 TTCAGGCCAGAGATGGTTCCAGCATCCTTAGTAGCCTGACGCTGGGAATCGTTGAAGTAG 1496747
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480
||||| || || || || |||| ||| ||
Sbjct 1496748 GCAGGCACTGTGATCACAGCATTTGTGAC 1496776
Score = 104 bits (114), Expect = 2e-16
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746
|| |||| || || |||||||| || | ||| |||| | ||||||||||| |||||||
Sbjct 1513958 CACCAAAGATTGTGTTGGTTGGGTTCATTGCCACTTGGTTCTTGGCTGCATCACCAATCA 1513899
Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806
| ||| || ||||| || | ||||| ||| || || | || ||||| || || |
Sbjct 1513898 GTCTTTCGGTATCTGTGAAGGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCGTTGG 1513839
Query 282807 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 282866
|||||||||||||||| |||| || | | || ||||| | || ||||| | ||
Sbjct 1513838 CAATAATTTCAACTTTGCCATGCTGGAAGATTCCCACACATGAGTATGTGGTTCCCAGAT 1513779
Query 282867 CAATACCAATAGCAATT 282883
|||| || | |||| ||
Sbjct 1513778 CAATGCCTACAGCAGTT 1513762
Score = 100 bits (110), Expect = 2e-15
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
||||||| || ||||| || || | ||| | || | ||||||||||| ||||||||
Sbjct 1497336 CAAAAATTGTGTTGGTAGGGTTCATAGCAACCTGGTTCTTGGCTGCATCACCAATCAGTC 1497395
Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809
||| || ||||| || | ||||| ||| || || | || ||||| || || ||||
Sbjct 1497396 TTTCGGTATCTGTGAAGGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCGTTGGCAA 1497455
Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869
||||||||||||| |||| || | || || ||||| | || || || | |||||
Sbjct 1497456 TAATTTCAACTTTGCCATGCTGGAAGACTCCAACACAGGAGTATGTGGTCCCCAGATCAA 1497515
Query 282870 TACCAATAGC 282879
|||| | |||
Sbjct 1497516 TACCGACAGC 1497525
>seq592
Length=234143
Score = 98.7 bits (108), Expect = 7e-15
Identities = 111/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | ||||| || | || || || ||||| ||||||||||| | | |||
Sbjct 14670 TTTTTGTCCAACCCATAGGCGATGGCCGCTGCTGTTGGCTCATTAATAATGCGGAGGACA 14611
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| || |||||||| | || || ||||| |||||||| || || || ||||| || ||
Sbjct 14610 TTCAGGCCAGCAATAGTACCAGCGTCTTTGGTGGCTTGCCTCTGAGAGTCGTTGAAGTAG 14551
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480
||||| || || || || |||| ||||||
Sbjct 14550 GCAGGTACTGTGATGACTGCATTTGTTAC 14522
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740103356866110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |