Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq167 242 3e-58 seq10671 107 1e-17 seq592 98.7 7e-15 >seq167 Length=797236 Score = 242 bits (268), Expect = 3e-58 Identities = 941/1463 (64%), Gaps = 22/1463 (2%) Strand=Plus/Plus Query 281425 GGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGAC 281484 ||||| || || || || || ||||| || | ||| || ||||| || || ||||| || Sbjct 617843 GGCAGAAACGTTCAGGATGCCGTTGGCGTCGATATCGAAGGTGACCTCGATCTGAGGTAC 617902 Query 281485 CCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTT 281544 || | | ||||| || || ||| | | ||| | || || || || ||||| Sbjct 617903 ACCCCGTGGTGCAGGGGGAATACCTGTGAGTTCAAACTTGCCGAGGAGGTTGTTGTCTTT 617962 Query 281545 AGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATA 281604 || | ||| || || ||| | | |||||| ||| | | || || || || || Sbjct 617963 GGTCATGGCTCGCTCCCCTTCGTAGACTTGGATCAGCACTCCTGGCTGGTTGTCGGAGTA 618022 Query 281605 AGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGG 281663 ||| | || | |||| | | ||| || || || || || | | || | || Sbjct 618023 AGTGGAGAAAA-TCTGCGTCTGTTTGTTGGGGATGGTGGTATTGCGCTTGATGAGGGCGG 618081 Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA-CA 281722 |||||| || || || || || | ||| || || || || | ||||| | |||| || Sbjct 618082 TCATAACTCCTCCGGCGGTCTCAATACCCAGTGACAGCGGTGCCACATCCAGCAGGAGCA 618141 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | | || ||||| | | || | ||| | ||||| || || || | || || || Sbjct 618142 AGTCCTGGACGTTTTCCGAC-GTGTCACCCATGAGAATGGCGGCCTGCACTGCCGCGCCG 618200 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 || || || ||||| || ||||| | | | || || | | ||||| || || | | Sbjct 618201 TAAGCCACTGCTTCGTCTGGATTGATGCTCTTGTTGAGGTCCCTGCCATTAAAGAATTCT 618260 Query 281843 GAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 ||||||| ||| | ||| || || | | || || ||||| || ||||| || || Sbjct 618261 TGCAGAAGTT-TCTGGATCTTGGGGATTCTTGTGGAGCCACCAACCAACACAATATCGTG 618319 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | ||| || ||||||| ||| | || ||| | || || || |||||||| | Sbjct 618320 AATCTGGGACTTATCCATTTTGGCGTCTCTCAAAGCCTTCTCCACCGGTTCAAGGGTGCC 618379 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 282021 |||||| | || || ||| || || || |||||| || | | | | |||| Sbjct 618380 TCTAAAAAGCTCAGAGTTAAGCTCCTCAAAGCGAGCTCTGGTGATGGAGGTGTAGAAATC 618439 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081 | || || ||| || || | ||||| | | |||| || || || | | Sbjct 618440 TACACCCTCATACAGGGAGTCGATCTCAATGCTGGCCTGAGAGCTGGAGGACAGGGTTCT 618499 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGATTCA 282137 || || | || || |||||||| | || || | ||| || | |||| |||| Sbjct 618500 CTTGGCTCTCTCGCAGGCTGTCCTCAACCTCCGGACGGCCCTCTTGTTCTGAGTGATG-- 618557 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTATC 282195 ||| | || | || |||||||| || || ||| | |||| || | ||||| || Sbjct 618558 --TCTTTCTTGTGCTTCCTCTTGAACTCCTCCACAAAG--TGTTGGACCATGCGATTGTC 618613 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||| ||||| || ||||| | ||| | ||| | || ||| | || | || | ||||| Sbjct 618614 AAAGTCTTCCCCACCCAAGTGAGTGTCTCCAGCTGTGGCTTTCACCTCAAAGATGCCATC 618673 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 || | | || | || ||||||| ||| || || |||| ||||| || || ||||| Sbjct 618674 CTCGATGGTCAGGATAGAAACATCAAAGGTGCCTCCTCCCAAGTCAAAGATCAGGACATT 618733 Query 282316 CATTTCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 282374 | | || | ||||| || || ||||| || |||| || || || || || |||| Sbjct 618734 CCTCTCGCCTCTCTTGCCCTTG-TCCAGACCGTAGGCAATGGCGGCTGCTGTGGGCTCAT 618792 Query 282375 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 282434 | || ||||||| ||||| || |||||||| ||| |||||||| || || || || | Sbjct 618793 TGATGATTCTCAGCACATTCAGTCCAGCAATCACTCCAGCATCTTTGGTCGCCTGCCTCT 618852 Query 282435 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACT-TCTTTTCCAATA 282493 | || ||||| || || || || || || || ||||||| || ||| ||| |||| | Sbjct 618853 GGGAGTCGTTGAAGTAAGCCGGGACTGTGATTACGGCATTGGTGACTCTCTGGCCCAA-A 618911 Query 282494 TAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAA 282553 || || | | | ||||||| | | ||| || || || | || || || Sbjct 618912 TAGGCTTCAGAAATCTCCCTCATTTTCACAAGGACCATAGACGAGATCTCCTCAGGGTAA 618971 Query 282554 TATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 282613 | ||| || | || || || | | || || ||| || | || Sbjct 618972 AAGGTCTTCACCTCCCCCTTGTACTCCACCTCCACTTTCGGCTTGCCTCCATCACTGATC 619031 Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 |||||||| ||||| |||||| ||||| ||||| ||||| ||| ||| ||| Sbjct 619032 ACTTTAAAGGGCCAGAGTTTCATGTCTGACTGAACCACAGCGTCATCAAACCTTCTGCCA 619091 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 || | || |||||||||||||| || ||| | ||||| | || | || | |||||| Sbjct 619092 ATCAGACGCTTTGCATCAAAAATGGTGTTGTTGGGATTCATGGCGACCTGGTTTTTGGCA 619151 Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793 |||||||| || || || || |||||||| | ||||| |||||||| | || Sbjct 619152 GCATCTCCGATGAGCCTCTCAGTGTCTGTAAACGCCACATAGCTGGGAGTTGTCCTGTTT 619211 Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAA 282853 |||||||| || ||||| ||||||||||| |||| || | ||||| ||||| | Sbjct 619212 CCTTGATCGTTGGCAATGATTTCAACTTTGCCATGCTGGAAAACACCCACACAGGAGTAG 619271 Query 282854 GTTGTTCCTAAATCAATACCAAT 282876 || ||||| | ||||| ||||| Sbjct 619272 GTAGTTCCAAGGTCAATTCCAAT 619294 >seq10671 Length=1829250 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || ||||| || |||| |||||||||||||| ||||| || || | || |||| Sbjct 1496628 TTTTTGTCCAGACCGTAAGCAATTGCAGCAGCAGTTGGCTCATTGATGATACGCAGAACA 1496687 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| || |||| ||||| ||||| || || | || |||||||| || || Sbjct 1496688 TTCAGGCCAGAGATGGTTCCAGCATCCTTAGTAGCCTGACGCTGGGAATCGTTGAAGTAG 1496747 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| || || || || |||| ||| || Sbjct 1496748 GCAGGCACTGTGATCACAGCATTTGTGAC 1496776 Score = 104 bits (114), Expect = 2e-16 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 282687 CATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCA 282746 || |||| || || |||||||| || | ||| |||| | ||||||||||| ||||||| Sbjct 1513958 CACCAAAGATTGTGTTGGTTGGGTTCATTGCCACTTGGTTCTTGGCTGCATCACCAATCA 1513899 Query 282747 GATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCG 282806 | ||| || ||||| || | ||||| ||| || || | || ||||| || || | Sbjct 1513898 GTCTTTCGGTATCTGTGAAGGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCGTTGG 1513839 Query 282807 CAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAAT 282866 |||||||||||||||| |||| || | | || ||||| | || ||||| | || Sbjct 1513838 CAATAATTTCAACTTTGCCATGCTGGAAGATTCCCACACATGAGTATGTGGTTCCCAGAT 1513779 Query 282867 CAATACCAATAGCAATT 282883 |||| || | |||| || Sbjct 1513778 CAATGCCTACAGCAGTT 1513762 Score = 100 bits (110), Expect = 2e-15 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 ||||||| || ||||| || || | ||| | || | ||||||||||| |||||||| Sbjct 1497336 CAAAAATTGTGTTGGTAGGGTTCATAGCAACCTGGTTCTTGGCTGCATCACCAATCAGTC 1497395 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||| || ||||| || | ||||| ||| || || | || ||||| || || |||| Sbjct 1497396 TTTCGGTATCTGTGAAGGCCACATAGCTTGGCGTGGTCCTGTTTCCTTGGTCGTTGGCAA 1497455 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 ||||||||||||| |||| || | || || ||||| | || || || | ||||| Sbjct 1497456 TAATTTCAACTTTGCCATGCTGGAAGACTCCAACACAGGAGTATGTGGTCCCCAGATCAA 1497515 Query 282870 TACCAATAGC 282879 |||| | ||| Sbjct 1497516 TACCGACAGC 1497525 >seq592 Length=234143 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| || | || || || ||||| ||||||||||| | | ||| Sbjct 14670 TTTTTGTCCAACCCATAGGCGATGGCCGCTGCTGTTGGCTCATTAATAATGCGGAGGACA 14611 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||||||| | || || ||||| |||||||| || || || ||||| || || Sbjct 14610 TTCAGGCCAGCAATAGTACCAGCGTCTTTGGTGGCTTGCCTCTGAGAGTCGTTGAAGTAG 14551 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| || || || || |||| |||||| Sbjct 14550 GCAGGTACTGTGATGACTGCATTTGTTAC 14522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740103356866110