Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_024303.1
Length=144898
Score E
Sequences producing significant alignments: (Bits) Value
seq10656 104 2e-17
>seq10656
Length=6391350
Score = 104 bits (114), Expect = 2e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184
|| ||||||||||||| ||| ||||| | || ||||||| ||| |||| |||||
Sbjct 2879939 AGTATTTGGGGGCCTACCTGTGATGGACTGGACCGCATTGTAGAGCAGTGTTCCCTGCCT 2879998
Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244
|| | || ||||| |||||||| | |||||||| ||||| ||||||| ||| |
Sbjct 2879999 GACATGCAGGTGGGAGACTGGCTGCTGTTTGAAAATATGGGTGCTTACACAGTGGCTGCC 2880058
Query 21245 TCTTCAACCTTTAACGGCTTCCCAAAGCCAGA 21276
|| || ||||| |||||||||| || |||||
Sbjct 2880059 TCCTCTACCTTCAACGGCTTCCAGAAACCAGA 2880090
Score = 84.2 bits (92), Expect = 2e-11
Identities = 119/165 (72%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGC-CAG 20622
||||||||||| ||| ||| ||||||||| ||||| || ||| | | |||| |||
Sbjct 2878892 GATGACTCTAAAGCAGTGTGCAGACTGAGTGTGAAGTTCGGAGCTACGCT-GAAGAGCAG 2878950
Query 20623 CCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCA 20682
| | || || | | ||| || || ||||| | | || || ||||||||||| ||
Sbjct 2878951 CAGGCTGCTTCTGGAGCGGGCGAAGGAACTAGGCTTGAATGTCATTGGAGTCAGCTTTCA 2879010
Query 20683 CGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCAT 20727
||| ||||||||||||| || || || ||||||| | |||||
Sbjct 2879011 CGTAGGCAGTGGCTGCACTGACCCAGAGACTTACAGCCAGGCCAT 2879055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 463483397974800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |