Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq10656 104 2e-17 >seq10656 Length=6391350 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 || ||||||||||||| ||| ||||| | || ||||||| ||| |||| ||||| Sbjct 2879939 AGTATTTGGGGGCCTACCTGTGATGGACTGGACCGCATTGTAGAGCAGTGTTCCCTGCCT 2879998 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGC 21244 || | || ||||| |||||||| | |||||||| ||||| ||||||| ||| | Sbjct 2879999 GACATGCAGGTGGGAGACTGGCTGCTGTTTGAAAATATGGGTGCTTACACAGTGGCTGCC 2880058 Query 21245 TCTTCAACCTTTAACGGCTTCCCAAAGCCAGA 21276 || || ||||| |||||||||| || ||||| Sbjct 2880059 TCCTCTACCTTCAACGGCTTCCAGAAACCAGA 2880090 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGC-CAG 20622 ||||||||||| ||| ||| ||||||||| ||||| || ||| | | |||| ||| Sbjct 2878892 GATGACTCTAAAGCAGTGTGCAGACTGAGTGTGAAGTTCGGAGCTACGCT-GAAGAGCAG 2878950 Query 20623 CCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCA 20682 | | || || | | ||| || || ||||| | | || || ||||||||||| || Sbjct 2878951 CAGGCTGCTTCTGGAGCGGGCGAAGGAACTAGGCTTGAATGTCATTGGAGTCAGCTTTCA 2879010 Query 20683 CGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCAT 20727 ||| ||||||||||||| || || || ||||||| | ||||| Sbjct 2879011 CGTAGGCAGTGGCTGCACTGACCCAGAGACTTACAGCCAGGCCAT 2879055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463483397974800