Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq10555 147 4e-30 seq183 131 3e-25 >seq10555 Length=3328687 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| |||| ||| || || | ||| || ||| || ||||| || || || || | Sbjct 3315437 TACCTCCCCTCAGACGGAGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGG 3315496 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| ||||| || || || || |||||||| || | || || || || | Sbjct 3315497 AGAGAGTACGACCATCTTCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTG 3315556 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||||||||| ||||| ||||| || || ||||| || || | ||||| | Sbjct 3315557 GGATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCA 3315616 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || ||||| || || | ||||| ||||| |||||||| Sbjct 3315617 CCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| |||| ||| || || | ||| || || || || ||||| || || || || | Sbjct 3318415 TACCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 3318474 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | |||||||| || || || ||||| ||||| || | || || || || | Sbjct 3318475 ACAGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTG 3318534 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||||||||| ||||| ||||| || || || || || || | || || | Sbjct 3318535 GGATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCA 3318594 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || ||||| || |||| |||||| ||||| |||||||| Sbjct 3318595 CCTCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 3318643 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| |||| ||| || || | || || || || || ||||| || || || || | Sbjct 3315665 TACCTCCCCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 3315724 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || ||||| ||||| | | || || || |||| Sbjct 3315725 ACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAG 3315784 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| || ||||| ||||| || || ||||| || ||| | || || | Sbjct 3315785 GAATGCCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCA 3315844 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||| || |||||||| |||| |||||| || || |||||||| Sbjct 3315845 CTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | || || || || || ||||| || || || || || || | | || Sbjct 3315222 ACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 3315281 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| || || || ||||||||||| || | || || || || || ||||| ||||| Sbjct 3315282 ATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTT 3315341 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| || || || || || ||||||||||| || ||| | || || ||||| | ||| || Sbjct 3315342 ATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGAT 3315401 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||| |||||| || || |||||||| Sbjct 3315402 GGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || || || || || || |||||||||||||| || || || || ||||||||||| || Sbjct 3318294 TGCTGGTCAGGGGGAATGCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATGGTG 3318353 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || | || || ||||| | ||| || |||||||| |||| |||||| || || |||||| Sbjct 3318354 TCGCTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGC 3318413 Query 82809 AT 82810 || Sbjct 3318414 AT 3318415 >seq183 Length=784777 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||| || | ||| || || | ||||| || ||||||||||| || || || || || Sbjct 331858 CCTCCCCTGAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 331917 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| || |||||||| | || || |||||||| || Sbjct 331918 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 331977 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| || || || || ||||| || || | || || || Sbjct 331978 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACC 332037 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || |||||||| |||| ||||| || || |||||||| Sbjct 332038 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 332084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981692157339165