Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq10555 138 1e-27 seq183 120 3e-22 seq10607 82.4 7e-11 >seq10555 Length=3328687 Score = 138 bits (152), Expect = 1e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| || ||| | | | || || |||| Sbjct 3315690 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCT 3315748 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || | ||||||||||||||||| ||||||||||| || ||||| Sbjct 3315749 GCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCT 3315808 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | |||| | ||||| ||||| | |||||||| |||| |||| ||| ||||| | Sbjct 3315809 TGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAG 3315868 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 3315869 TCAGCGTCTTCACGAAGATCTGCAT 3315893 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| ||| || |||||||| || Sbjct 3318446 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTACC 3318505 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||||||||| ||||| || ||||| || |||||| || Sbjct 3318506 AGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTT 3318565 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | |||||| | |||||||| || | ||||| ||| || || ||||| || Sbjct 3318566 GACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTCTTACCAGTCAGCGT 3318625 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 3318626 CTTCACAAAGATCTGCAT 3318643 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || ||||| ||| || ||| | | | || || |||| Sbjct 3315234 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCT 3315292 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || |||||||||||||| ||||| || ||||| || ||| | Sbjct 3315293 GCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCCTGGATTT 3315352 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | |||| ||||| | |||||||| |||| |||| ||| || || | Sbjct 3315353 TAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTACCAG 3315412 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 3315413 TCAGCGTCTTCACGAAGATCTGCAT 3315437 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527 ||| ||||| || ||||| ||| | || ||| | || || |||||||| || || Sbjct 3315474 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCA-TCTTCAAGCTGCTTACCGGCAA 3315532 Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587 | || || ||||||||||| || ||||| || ||||| || |||||| |||| | Sbjct 3315533 AGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTGACGT 3315592 Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647 ||||| |||||| |||| ||||| || | ||||| ||| || || || || || || | Sbjct 3315593 TCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGA 3315652 Query 133648 CGAAAATCTGCAT 133660 | || |||||||| Sbjct 3315653 CAAAGATCTGCAT 3315665 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 133538 CTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGT 133597 ||||||||| || || ||||||||||| || ||| || ||| | | |||| || Sbjct 3318293 CTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATGGT 3318352 Query 133598 GTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTG 133657 |||| | |||||||| |||| |||| ||| ||||| ||||| || || ||||| ||||| Sbjct 3318353 GTCGCTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTG 3318412 Query 133658 CAT 133660 ||| Sbjct 3318413 CAT 3318415 >seq183 Length=784777 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| |||||||| ||| || ||| | | | || || ||||||||||| Sbjct 332116 GTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCA-TCTTCCAGCTGCTTGCC 332174 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | || ||||||||| || || |||||||| ||||| |||||| || Sbjct 332175 AGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTT 332234 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | ||||| || || | ||||| ||| ||||| || || || Sbjct 332235 GACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGT 332294 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 332295 CTTCACAAAGATTTGCAT 332312 Score = 107 bits (118), Expect = 2e-18 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | || || ||||| ||||| Sbjct 331656 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCG 331715 Query 133524 GCGTAAATGAGCCG----CTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579 || | || | || |||||| || || || ||||| || ||||| |||||| Sbjct 331716 GCAAAGATCAACCAACCTCTGCTGATCTGGGGGAATGCCCTCTTTGTCTTGGATCTTGGC 331775 Query 133580 CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 |||| | ||||| |||||| | ||||| || || | ||||| ||| ||||||||||| Sbjct 331776 TTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAG 331835 Query 133640 AGTTTTTACGAAAATCTGCATGGCT 133664 || |||||||| ||||||||| || Sbjct 331836 GGTCTTTACGAAGATCTGCATGCCT 331860 >seq10607 Length=2140885 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || ||||| | |||| |||||||||||| || ||| | ||||| || ||| Sbjct 830786 TACTCCACAATCTCTGTACACAAATTGCTGCATTTAATGGTGCCGAGGTTCTGCTGGTTG 830845 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 ||||| || ||||| || || ||||| |||||||| || |||||| || Sbjct 830846 CTCTTCCTATTGCAGGCATCTTTGTAAAGCATGTAGGGAGTGCCAGTCTC 830895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483355930971400