Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 138 1e-27
seq183 120 3e-22
seq10607 82.4 7e-11
>seq10555
Length=3328687
Score = 138 bits (152), Expect = 1e-27
Identities = 155/205 (76%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||||||||| ||||| || ||||| ||| || ||| | | | || || ||||
Sbjct 3315690 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCT 3315748
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| || ||| | || | ||||||||||||||||| ||||||||||| || |||||
Sbjct 3315749 GCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCT 3315808
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| |||| | ||||| ||||| | |||||||| |||| |||| ||| ||||| |
Sbjct 3315809 TGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAG 3315868
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
|||| || || ||||| ||||||||
Sbjct 3315869 TCAGCGTCTTCACGAAGATCTGCAT 3315893
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| ||| || ||| ||| || |||||||| ||
Sbjct 3318446 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTACC 3318505
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || || |||||||||||||| ||||| || ||||| || |||||| ||
Sbjct 3318506 AGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTT 3318565
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||| | |||||| | |||||||| || | ||||| ||| || || ||||| ||
Sbjct 3318566 GACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTCTTACCAGTCAGCGT 3318625
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || || ||||||||
Sbjct 3318626 CTTCACAAAGATCTGCAT 3318643
Score = 114 bits (126), Expect = 1e-20
Identities = 150/205 (73%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515
||| | ||||||||| ||||| || ||||| ||| || ||| | | | || || ||||
Sbjct 3315234 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCT 3315292
Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575
|||| || || | || || |||||||||||||| ||||| || ||||| || ||| |
Sbjct 3315293 GCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCCTGGATTT 3315352
Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635
| ||| | | |||| ||||| | |||||||| |||| |||| ||| || || |
Sbjct 3315353 TAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTACCAG 3315412
Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660
|||| || || ||||| ||||||||
Sbjct 3315413 TCAGCGTCTTCACGAAGATCTGCAT 3315437
Score = 98.7 bits (108), Expect = 1e-15
Identities = 139/193 (72%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 133469 CTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGT 133527
||| ||||| || ||||| ||| | || ||| | || || |||||||| || ||
Sbjct 3315474 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCA-TCTTCAAGCTGCTTACCGGCAA 3315532
Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCT 133587
| || || ||||||||||| || ||||| || ||||| || |||||| |||| |
Sbjct 3315533 AGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTGACGT 3315592
Query 133588 GCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTA 133647
||||| |||||| |||| ||||| || | ||||| ||| || || || || || || |
Sbjct 3315593 TCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGA 3315652
Query 133648 CGAAAATCTGCAT 133660
| || ||||||||
Sbjct 3315653 CAAAGATCTGCAT 3315665
Score = 87.8 bits (96), Expect = 2e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 133538 CTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGT 133597
||||||||| || || ||||||||||| || ||| || ||| | | |||| ||
Sbjct 3318293 CTGCTGGTCAGGGGGAATGCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATGGT 3318352
Query 133598 GTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTG 133657
|||| | |||||||| |||| |||| ||| ||||| ||||| || || ||||| |||||
Sbjct 3318353 GTCGCTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTG 3318412
Query 133658 CAT 133660
|||
Sbjct 3318413 CAT 3318415
>seq183
Length=784777
Score = 120 bits (132), Expect = 3e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|||||||||||||| |||||||| ||| || ||| | | | || || |||||||||||
Sbjct 332116 GTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCA-TCTTCCAGCTGCTTGCC 332174
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || | || ||||||||| || || |||||||| ||||| |||||| ||
Sbjct 332175 AGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTT 332234
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||||| ||||| | ||||| || || | ||||| ||| ||||| || || ||
Sbjct 332235 GACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGT 332294
Query 133643 TTTTACGAAAATCTGCAT 133660
|| || || || |||||
Sbjct 332295 CTTCACAAAGATTTGCAT 332312
Score = 107 bits (118), Expect = 2e-18
Identities = 147/205 (72%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| ||||| || ||||| || || ||| | || || ||||| |||||
Sbjct 331656 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCG 331715
Query 133524 GCGTAAATGAGCCG----CTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG 133579
|| | || | || |||||| || || || ||||| || ||||| ||||||
Sbjct 331716 GCAAAGATCAACCAACCTCTGCTGATCTGGGGGAATGCCCTCTTTGTCTTGGATCTTGGC 331775
Query 133580 CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639
|||| | ||||| |||||| | ||||| || || | ||||| ||| |||||||||||
Sbjct 331776 TTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAG 331835
Query 133640 AGTTTTTACGAAAATCTGCATGGCT 133664
|| |||||||| ||||||||| ||
Sbjct 331836 GGTCTTTACGAAGATCTGCATGCCT 331860
>seq10607
Length=2140885
Score = 82.4 bits (90), Expect = 7e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925
||||| || ||||| | |||| |||||||||||| || ||| | ||||| || |||
Sbjct 830786 TACTCCACAATCTCTGTACACAAATTGCTGCATTTAATGGTGCCGAGGTTCTGCTGGTTG 830845
Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975
||||| || ||||| || || ||||| |||||||| || |||||| ||
Sbjct 830846 CTCTTCCTATTGCAGGCATCTTTGTAAAGCATGTAGGGAGTGCCAGTCTC 830895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483355930971400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |