Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq10712 116 4e-21
>seq10712
Length=1479189
Score = 116 bits (128), Expect = 4e-21
Identities = 294/441 (67%), Gaps = 6/441 (1%)
Strand=Plus/Plus
Query 162555 GTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTCTAGACTGTT 162614
||||| |||| |||||||| | |||| | | | | | || ||||| | |||||
Sbjct 1209068 GTGTCGCTTCTTCCACCTGTACTCCTTATTAGAGGGCATGGTCTCAGTCTCCAAGCTGTT 1209127
Query 162615 ACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTC 162674
| ||| ||| ||||||| |||||||||||| || ||||| || | |||||||||
Sbjct 1209128 GCCACCATGCAACCCCTTCAGGGCACGCACCATCTCCAGGTTGGTTTTCATGGGAAAGTC 1209187
Query 162675 GGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAG 162734
|| || || ||||| | || ||||| | |||| ||| || |||| |
Sbjct 1209188 CTGACCACAAAGGTTAATGAAGTACTTCCAGCGGTCACTGATCTGGTAAAGGTCCTTCAT 1209247
Query 162735 ACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTC-TCCAACCTAG 162793
||||| | || |||||||| |||||||| ||||| || || ||| |||| | |
Sbjct 1209248 GCAGTTGATGTCAGCCTGGACACGACTCCAGCTGGCGTAGACCAC-CTCTTCCAGCTGAC 1209306
Query 162794 TGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGT-GAGAACA-T 162851
|||| | || |||||||| || || || || | | | | || | ||| | |
Sbjct 1209307 TGGCAATGAAAACATTGTCAAAGCAGGAGACGGTGGCATTGATTGCTGCTCGAGTTGACT 1209366
Query 162852 CGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCT 162911
||| || || |||| || || | ||||| | |||||||| |||||||||| ||
Sbjct 1209367 CGG--AGGCCTTTTTATCCACATGGATACAGTAAAAGTTCTGAGGAGCGTAGATGGATCT 1209424
Query 162912 CAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAA 162971
||| | | |||||| ||| | ||| || || || ||||| |||||||| | |||||
Sbjct 1209425 CAGAAGCCGCTCGAAGTTCTGCACCTTGTGATGAACTACGATGGAATACGCCAGTGGGAA 1209484
Query 162972 CTCAGCCTCCTCGCGACTGAG 162992
| | ||||| ||||||
Sbjct 1209485 GGCCTCTTCCTCCGCACTGAG 1209505
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578354381656000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |