Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq10712 116 4e-21 >seq10712 Length=1479189 Score = 116 bits (128), Expect = 4e-21 Identities = 294/441 (67%), Gaps = 6/441 (1%) Strand=Plus/Plus Query 162555 GTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTCTAGACTGTT 162614 ||||| |||| |||||||| | |||| | | | | | || ||||| | ||||| Sbjct 1209068 GTGTCGCTTCTTCCACCTGTACTCCTTATTAGAGGGCATGGTCTCAGTCTCCAAGCTGTT 1209127 Query 162615 ACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTC 162674 | ||| ||| ||||||| |||||||||||| || ||||| || | ||||||||| Sbjct 1209128 GCCACCATGCAACCCCTTCAGGGCACGCACCATCTCCAGGTTGGTTTTCATGGGAAAGTC 1209187 Query 162675 GGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAG 162734 || || || ||||| | || ||||| | |||| ||| || |||| | Sbjct 1209188 CTGACCACAAAGGTTAATGAAGTACTTCCAGCGGTCACTGATCTGGTAAAGGTCCTTCAT 1209247 Query 162735 ACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTC-TCCAACCTAG 162793 ||||| | || |||||||| |||||||| ||||| || || ||| |||| | | Sbjct 1209248 GCAGTTGATGTCAGCCTGGACACGACTCCAGCTGGCGTAGACCAC-CTCTTCCAGCTGAC 1209306 Query 162794 TGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGT-GAGAACA-T 162851 |||| | || |||||||| || || || || | | | | || | ||| | | Sbjct 1209307 TGGCAATGAAAACATTGTCAAAGCAGGAGACGGTGGCATTGATTGCTGCTCGAGTTGACT 1209366 Query 162852 CGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCT 162911 ||| || || |||| || || | ||||| | |||||||| |||||||||| || Sbjct 1209367 CGG--AGGCCTTTTTATCCACATGGATACAGTAAAAGTTCTGAGGAGCGTAGATGGATCT 1209424 Query 162912 CAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAA 162971 ||| | | |||||| ||| | ||| || || || ||||| |||||||| | ||||| Sbjct 1209425 CAGAAGCCGCTCGAAGTTCTGCACCTTGTGATGAACTACGATGGAATACGCCAGTGGGAA 1209484 Query 162972 CTCAGCCTCCTCGCGACTGAG 162992 | | ||||| |||||| Sbjct 1209485 GGCCTCTTCCTCCGCACTGAG 1209505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578354381656000