Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 109 4e-19
seq183 109 4e-19
>seq10555
Length=3328687
Score = 109 bits (120), Expect = 4e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||| || |||| ||| | |||| || || ||| ||| || || |||||||| |||||
Sbjct 3318416 ACCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3318475
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| |||||| |||| |||| || || || || || |||| ||||||||| || | ||
Sbjct 3318476 CAGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGG 3318535
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| || || || || || || ||| | | | || | ||||||||||| ||||
Sbjct 3318536 GATTCCCTCCTTATCTTGGATCTTGGCTTTGA-CGTTCTCGATGGTGTCGCTTGGCTCCA 3318594
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || | ||||| || ||||| || | ||| || ||||||||||||||
Sbjct 3318595 CCTCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 3318643
Score = 104 bits (114), Expect = 2e-17
Identities = 148/206 (72%), Gaps = 2/206 (1%)
Strand=Plus/Plus
Query 33546 ATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTG 33605
||| || ||| ||| || || |||||||| ||||| || |||||| | || |||| ||
Sbjct 3315234 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTG 3315293
Query 33606 TTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTT 33665
|| || ||||| |||| ||||||||| || | || | || || || || |||||
Sbjct 3315294 CTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCCTGGATTTT 3315353
Query 33666 CTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTG 33724
|||| ||| ||| |||||| |||| ||||| || | ||||| || ||||| |
Sbjct 3315354 AGCCTTCA-CATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTACCAG 3315412
Query 33725 TTAACGTTTTTACAAAGATCTGCATA 33750
| | ||| || || ||||||||||||
Sbjct 3315413 TCAGCGTCTTCACGAAGATCTGCATA 3315438
Score = 102 bits (112), Expect = 5e-17
Identities = 162/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||| || |||| ||| | || | ||| || ||| ||| || || |||||||| |||||
Sbjct 3315666 ACCTCCCCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3315725
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
|| |||||| | || |||| || || || || || |||||||||||||| || | ||
Sbjct 3315726 CAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGG 3315785
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700
| ||||| || || || || | || || | || | |||||| |||| ||||
Sbjct 3315786 AATGCCTTCCTTATCCTGGATCTT-GGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCA 3315844
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || || || || | ||| || || ||||||||||||
Sbjct 3315845 CTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCATA 3315894
Score = 96.9 bits (106), Expect = 2e-15
Identities = 161/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581
||| || |||| ||| | || | || || || ||||| || || |||||||| |||||
Sbjct 3315438 ACCTCCCCTCAGACGGAGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGA 3315497
Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641
||| || || | || || | || || |||||||| |||| ||||||||| || | ||
Sbjct 3315498 GAGAGTACGACCATCTTCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGG 3315557
Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700
| || || || || || || ||| | | | ||| |||||||| | |||||
Sbjct 3315558 GATTCCCTCCTTATCTTGGATCTTGGCTTTGA-CGTTCTCAATAGTGTCGCTGGGTTCCA 3315616
Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750
| || | ||||| || ||||| || | || || |||||||||||||||
Sbjct 3315617 CCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCATA 3315666
>seq183
Length=784777
Score = 109 bits (120), Expect = 4e-19
Identities = 165/232 (71%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || || | ||| | ||||| || |||||| ||| || || |||||||| || ||
Sbjct 331626 CCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 331685
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACG----CTGCTGATCTTG 33638
|| ||||| | || |||| ||||| |||||||| ||||| | |||||||||| |
Sbjct 331686 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGG 331745
Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATT 33697
|| | || |||||||| || || ||| | ||| ||| ||||||||||| |
Sbjct 331746 GGGAATGCCCTCTTTGTCTTGGATCTTGGCTTTGA-CATTCTCAATGGTGTCGCTTGGCT 331804
Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
| || |||| ||||| || || || || | || ||||| |||||||||||
Sbjct 331805 CAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || || | ||| | || | ||| || ||| ||||| || |||||||| |||||
Sbjct 331858 CCTCCCCTGAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAC 331917
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| ||||| |||||||| ||||| | |||||||||| | ||
Sbjct 331918 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 331977
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| || || ||| || | || | ||||||||||| || ||
Sbjct 331978 ATGCCTTCTTTGTCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCGCTTGGCTCAAC 332036
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | ||||| || || || || | || || || |||||||||||
Sbjct 332037 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 332084
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|| || || | ||| | || | ||| |||||| |||||| || || ||||| |||||
Sbjct 332086 CCTCCCCTGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGAC 332145
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
| |||||| | || |||| || || || || || ||||| | |||||| ||| | ||
Sbjct 332146 AAGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 332205
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||||||||| || || | || |||| || | ||||| |||| || ||
Sbjct 332206 ATGCCTTCTTTGTCCTGGATCTT-GGCTTTGACATTCTCAATTGTGTCACTTGGCTCAAC 332264
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || || | || || |||||||| |||||
Sbjct 332265 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCAT 332312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328660994731200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |