Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq183 104 6e-17 seq10555 89.7 1e-12 >seq183 Length=784777 Score = 104 bits (114), Expect = 6e-17 Identities = 144/198 (73%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 || || ||||| || || || ||||| | || || || |||| |||||| | || Sbjct 332297 AAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGT---GACACAATTGAG 332241 Query 206242 TCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTAT 206300 || ||||| || ||| || || |||||||| ||| || ||| || || | || Sbjct 332240 AATGTCAAAGCCAA-GATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGTTGAT 332182 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 |||||| || |||||| ||||||||||| | || ||| |||| ||||| |||||||||| Sbjct 332181 CTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCTTGTCCGACTACAATATCCAGAAAGA 332122 Query 206361 GTCTACTCTTCACCTTGT 206378 ||| ||||| || ||||| Sbjct 332121 GTCCACTCTCCATCTTGT 332104 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 ||||| || ||||| ||||||||||||| ||| ||||| | ||| || | |||||||||| Sbjct 332104 ACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCTTCC 332163 Query 204824 AGCTGCTTTCCGGCGAAGAT 204843 |||||||| || |||||||| Sbjct 332164 AGCTGCTTGCCAGCGAAGAT 332183 >seq10555 Length=3328687 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/198 (71%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 || ||||| || || || || |||||| | |||||||| |||| ||||| | || Sbjct 3315878 AAGACGCTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCAAGT---GACACCATTGAG 3315822 Query 206242 TCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTAT 206300 || ||||| || ||| || || || ||||| ||| || ||| || | | || Sbjct 3315821 AACGTCAAAGCCAA-GATCCAGGATAAGGAAGGCATTCCTCCCGACCAGCAGCGTTTGAT 3315763 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 |||||| || |||||| ||||||||||| | || || |||| |||||| ||||||| || Sbjct 3315762 CTTCGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGA 3315703 Query 206361 GTCTACTCTTCACCTTGT 206378 ||| || || || || || Sbjct 3315702 GTCCACCCTCCATCTCGT 3315685 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 || ||||| || || || || |||||| | |||||||| |||| ||||| | ||| Sbjct 3315422 AAGACGCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCAAGT---GACACCATTGAA 3315366 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || ||| || || || || || || ||||| || ||| || | || ||| Sbjct 3315365 AATGTGAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCCGACCAGCAGCGTCTGATC 3315306 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || || || |||||| ||||||||||| | || || |||| |||||| ||||||| ||| Sbjct 3315305 TTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAG 3315246 Query 206362 TCTACTCTTCACCTTGT 206378 || || || || || || Sbjct 3315245 TCCACCCTCCATCTCGT 3315229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181658249781935