Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq183 104 6e-17
seq10555 89.7 1e-12
>seq183
Length=784777
Score = 104 bits (114), Expect = 6e-17
Identities = 144/198 (73%), Gaps = 8/198 (4%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241
|| || ||||| || || || ||||| | || || || |||| |||||| | ||
Sbjct 332297 AAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAGT---GACACAATTGAG 332241
Query 206242 TCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTAT 206300
|| ||||| || ||| || || |||||||| ||| || ||| || || | ||
Sbjct 332240 AATGTCAAAGCCAA-GATCCAGGACAAAGAAGGCATTCCCCCAGACCAGCAGAGGTTGAT 332182
Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360
|||||| || |||||| ||||||||||| | || ||| |||| ||||| ||||||||||
Sbjct 332181 CTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCTTGTCCGACTACAATATCCAGAAAGA 332122
Query 206361 GTCTACTCTTCACCTTGT 206378
||| ||||| || |||||
Sbjct 332121 GTCCACTCTCCATCTTGT 332104
Score = 91.5 bits (100), Expect = 3e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823
||||| || ||||| ||||||||||||| ||| ||||| | ||| || | ||||||||||
Sbjct 332104 ACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCTTCC 332163
Query 204824 AGCTGCTTTCCGGCGAAGAT 204843
|||||||| || ||||||||
Sbjct 332164 AGCTGCTTGCCAGCGAAGAT 332183
>seq10555
Length=3328687
Score = 89.7 bits (98), Expect = 1e-12
Identities = 141/198 (71%), Gaps = 8/198 (4%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241
|| ||||| || || || || |||||| | |||||||| |||| ||||| | ||
Sbjct 3315878 AAGACGCTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCAAGT---GACACCATTGAG 3315822
Query 206242 TCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTAT 206300
|| ||||| || ||| || || || ||||| ||| || ||| || | | ||
Sbjct 3315821 AACGTCAAAGCCAA-GATCCAGGATAAGGAAGGCATTCCTCCCGACCAGCAGCGTTTGAT 3315763
Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360
|||||| || |||||| ||||||||||| | || || |||| |||||| ||||||| ||
Sbjct 3315762 CTTCGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGA 3315703
Query 206361 GTCTACTCTTCACCTTGT 206378
||| || || || || ||
Sbjct 3315702 GTCCACCCTCCATCTCGT 3315685
Score = 86.0 bits (94), Expect = 1e-11
Identities = 138/197 (70%), Gaps = 6/197 (3%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241
|| ||||| || || || || |||||| | |||||||| |||| ||||| | |||
Sbjct 3315422 AAGACGCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCAAGT---GACACCATTGAA 3315366
Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301
|| ||| || || || || || || ||||| || ||| || | || |||
Sbjct 3315365 AATGTGAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCCGACCAGCAGCGTCTGATC 3315306
Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361
|| || || |||||| ||||||||||| | || || |||| |||||| ||||||| |||
Sbjct 3315305 TTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACATCCAGAAGGAG 3315246
Query 206362 TCTACTCTTCACCTTGT 206378
|| || || || || ||
Sbjct 3315245 TCCACCCTCCATCTCGT 3315229
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181658249781935
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |