Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 113 4e-20
seq183 109 5e-19
>seq10555
Length=3328687
Score = 113 bits (124), Expect = 4e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||| || | ||| | | | ||||| || || |||||||||||| || ||| || |
Sbjct 3315223 CGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA 3315282
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
||||| ||||| ||||| | | |||| |||||||| || || || || || || || |||
Sbjct 3315283 TCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTA 3315342
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||||| |||| | ||| | || || | ||||||||||||| || |
Sbjct 3315343 TCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATG 3315402
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| ||||||||||| || || | ||| ||||||||
Sbjct 3315403 GTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437
Score = 102 bits (112), Expect = 8e-17
Identities = 139/194 (72%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||||||| || ||| || |||||| ||||| ||||| |
Sbjct 3315700 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCG 3315759
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | |||||| || || ||||| |||||||| ||||| || || ||| |
Sbjct 3315760 AAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCTTTGACG 3315819
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || || | ||||||||||||| || | || || |||||||| || ||
Sbjct 3315820 TTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTC 3315879
Query 132110 ATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 3315880 ACGAAGATCTGCAT 3315893
Score = 86.0 bits (94), Expect = 6e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991
||| || || |||||||||||| | ||||| |||||| ||||| ||||||| | |
Sbjct 3315474 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCAAGCTGCTTACCGGCAAA 3315533
Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051
||| |||||||| || || || || || || || ||||| || || ||| | |
Sbjct 3315534 GATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTT 3315593
Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111
|| | ||| ||| | || ||||| || | || | || |||||||| || || || |
Sbjct 3315594 CTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGAC 3315653
Query 132112 GAAAATCTGCAT 132123
|| ||||||||
Sbjct 3315654 AAAGATCTGCAT 3315665
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || |||||||||||| || ||| || ||||| ||||| ||||| |
Sbjct 3318450 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCG 3318509
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| |||||||| || || || || || || || ||||| || || ||| |
Sbjct 3318510 AAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTGACG 3318569
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || ||| | |||||||| || | || | || ||||||||||| || ||
Sbjct 3318570 TTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTCTTACCAGTCAGCGTCTTC 3318629
Query 132110 ATGAAAATCTGCAT 132123
| || ||||||||
Sbjct 3318630 ACAAAGATCTGCAT 3318643
>seq183
Length=784777
Score = 109 bits (120), Expect = 5e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| ||||| || |||||||||||| || ||| ||| |||||| |||||||| |||| |
Sbjct 331891 GATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCA 331950
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | | ||| |||||||| || ||||||||||| || || || ||||
Sbjct 331951 AAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACG 332010
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | || ||| | ||||| || |||| || | || || |||||||| || ||
Sbjct 332011 TTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 332070
Query 132110 ATGAAAATCTGCATGACT 132127
| ||| ||||||||| ||
Sbjct 332071 ACGAAGATCTGCATGCCT 332088
Score = 84.2 bits (92), Expect = 2e-11
Identities = 140/202 (69%), Gaps = 4/202 (2%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || ||||||||||| || ||| ||| |||||| |||||||| |||| |
Sbjct 331659 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCA 331718
Query 131990 TAGAT----TAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTT 132045
|||| | | ||| |||||||| || ||||| ||||| || || || |||
Sbjct 331719 AAGATCAACCAACCTCTGCTGATCTGGGGGAATGCCCTCTTTGTCTTGGATCTTGGCTTT 331778
Query 132046 CAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGT 132105
| | || | || ||| | ||||| || || | || | || || || ||||| ||
Sbjct 331779 GACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGT 331838
Query 132106 TTTTATGAAAATCTGCATGACT 132127
|||| ||| ||||||||| ||
Sbjct 331839 CTTTACGAAGATCTGCATGCCT 331860
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476547244734600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |