Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq10555 113 4e-20 seq183 109 5e-19 >seq10555 Length=3328687 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || || |||||||||||| || ||| || | Sbjct 3315223 CGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA 3315282 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| ||||| | | |||| |||||||| || || || || || || || ||| Sbjct 3315283 TCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTA 3315342 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| |||| | ||| | || || | ||||||||||||| || | Sbjct 3315343 TCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATG 3315402 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || ||||||||||| || || | ||| |||||||| Sbjct 3315403 GTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || |||||| ||||| ||||| | Sbjct 3315700 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCG 3315759 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||| || || ||||| |||||||| ||||| || || ||| | Sbjct 3315760 AAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCTTTGACG 3315819 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||||||||||| || | || || |||||||| || || Sbjct 3315820 TTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTC 3315879 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 3315880 ACGAAGATCTGCAT 3315893 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 ||| || || |||||||||||| | ||||| |||||| ||||| ||||||| | | Sbjct 3315474 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCAAGCTGCTTACCGGCAAA 3315533 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 ||| |||||||| || || || || || || || ||||| || || ||| | | Sbjct 3315534 GATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTGACGTT 3315593 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111 || | ||| ||| | || ||||| || | || | || |||||||| || || || | Sbjct 3315594 CTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGAC 3315653 Query 132112 GAAAATCTGCAT 132123 || |||||||| Sbjct 3315654 AAAGATCTGCAT 3315665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || ||||| ||||| ||||| | Sbjct 3318450 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCG 3318509 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || || || || ||||| || || ||| | Sbjct 3318510 AAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTGACG 3318569 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | |||||||| || | || | || ||||||||||| || || Sbjct 3318570 TTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTCTTACCAGTCAGCGTCTTC 3318629 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 3318630 ACAAAGATCTGCAT 3318643 >seq183 Length=784777 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||| || |||||||||||| || ||| ||| |||||| |||||||| |||| | Sbjct 331891 GATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCA 331950 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| |||||||| || ||||||||||| || || || |||| Sbjct 331951 AAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACG 332010 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||| || |||| || | || || |||||||| || || Sbjct 332011 TTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 332070 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 332071 ACGAAGATCTGCATGCCT 332088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/202 (69%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| ||| |||||| |||||||| |||| | Sbjct 331659 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCA 331718 Query 131990 TAGAT----TAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTT 132045 |||| | | ||| |||||||| || ||||| ||||| || || || ||| Sbjct 331719 AAGATCAACCAACCTCTGCTGATCTGGGGGAATGCCCTCTTTGTCTTGGATCTTGGCTTT 331778 Query 132046 CAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGT 132105 | | || | || ||| | ||||| || || | || | || || || ||||| || Sbjct 331779 GACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGT 331838 Query 132106 TTTTATGAAAATCTGCATGACT 132127 |||| ||| ||||||||| || Sbjct 331839 CTTTACGAAGATCTGCATGCCT 331860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476547244734600