Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq10646 156 6e-32 seq466 152 7e-31 seq237 100 4e-15 >seq10646 Length=1799187 Score = 156 bits (172), Expect = 6e-32 Identities = 174/231 (75%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||| | |||||||| |||||| |||| ||| ||| ||| | | Sbjct 1562955 TCTACAAGGTGTTGAAGCAGGTCCACCCCGACACCGGA-----ATC-TCCTCAAAGGCGA 1563008 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || || |||||||| |||| ||||||| | ||| | | Sbjct 1563009 TGGGTATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGTGAGTCTTCCC 1563068 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || ||||||||| ||| ||| | | | ||||||||||||||||||| Sbjct 1563069 GCCTGGCTCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGC 1563128 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| |||||| ||||||| |||||||||||||||||| |||| Sbjct 1563129 GCCTGCTTCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGAACCA 1563179 >seq466 Length=309202 Score = 152 bits (168), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| || || |||||||||||||| || || |||| ||| |||| ||||| Sbjct 47081 TACAAAGTCCTGAAGCAGGTGCACCCAGACAC-----GGGCATC-TCCTCCAAGGCCATG 47134 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| || |||| | ||| | ||| Sbjct 47135 GGCATCATGAACTCCTTCGTCAACGACATTTTCGAGCGAATCGCCGGAGAGTCTTCCCGC 47194 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||||| ||| ||| | | | ||||||||||||||||||||| Sbjct 47195 CTGGCTCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 47254 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| || || ||||||| Sbjct 47255 CTGCTTCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCTGAAGGCACCA 47303 >seq237 Length=550808 Score = 100 bits (110), Expect = 4e-15 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 ||||| || | ||||| ||||||||||| || || || || || |||||||||| | Sbjct 361634 CTCCAGCAGGGCCATGAGCATCATGAACTCCTTCGTTAATGATGTGTTCGACCGCATTGC 361575 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 |||||||||| | ||| | | | |||||||||| || ||| | || ||| | Sbjct 361574 CACCGAGGCCTCGAGACTGACCCAATACAACAAGCGCTCGACCATCACTAGCCGTGAGGT 361515 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 ||||||||||| || || | ||| ||| || ||||||| ||| || || || ||||| Sbjct 361514 GCAGACCGCCGTCCGGCTTCTGCTGCCCGGGGAGCTGGCCAAGCATGCAGTGTCTGAGGG 361455 Query 725138 CACCA 725142 |||| Sbjct 361454 GACCA 361450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176775789519070