Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq10646 156 6e-32
seq466 152 7e-31
seq237 100 4e-15
>seq10646
Length=1799187
Score = 156 bits (172), Expect = 6e-32
Identities = 174/231 (75%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
||||||||||| | |||||||| |||||| |||| ||| ||| ||| | |
Sbjct 1562955 TCTACAAGGTGTTGAAGCAGGTCCACCCCGACACCGGA-----ATC-TCCTCAAAGGCGA 1563008
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || || |||||||| |||| ||||||| | ||| | |
Sbjct 1563009 TGGGTATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGTGAGTCTTCCC 1563068
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||| | || ||||||||| ||| ||| | | | |||||||||||||||||||
Sbjct 1563069 GCCTGGCTCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGC 1563128
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| |||||| ||||||| |||||||||||||||||| ||||
Sbjct 1563129 GCCTGCTTCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGAACCA 1563179
>seq466
Length=309202
Score = 152 bits (168), Expect = 7e-31
Identities = 172/229 (75%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||| || || |||||||||||||| || || |||| ||| |||| |||||
Sbjct 47081 TACAAAGTCCTGAAGCAGGTGCACCCAGACAC-----GGGCATC-TCCTCCAAGGCCATG 47134
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
||||||||||| || ||||||||||| |||| || |||| | ||| | |||
Sbjct 47135 GGCATCATGAACTCCTTCGTCAACGACATTTTCGAGCGAATCGCCGGAGAGTCTTCCCGC 47194
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||| | || ||||||||| ||| ||| | | | |||||||||||||||||||||
Sbjct 47195 CTGGCTCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 47254
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| ||||||||| || || |||||||
Sbjct 47255 CTGCTTCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCTGAAGGCACCA 47303
>seq237
Length=550808
Score = 100 bits (110), Expect = 4e-15
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017
||||| || | ||||| ||||||||||| || || || || || |||||||||| |
Sbjct 361634 CTCCAGCAGGGCCATGAGCATCATGAACTCCTTCGTTAATGATGTGTTCGACCGCATTGC 361575
Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077
|||||||||| | ||| | | | |||||||||| || ||| | || ||| |
Sbjct 361574 CACCGAGGCCTCGAGACTGACCCAATACAACAAGCGCTCGACCATCACTAGCCGTGAGGT 361515
Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137
||||||||||| || || | ||| ||| || ||||||| ||| || || || |||||
Sbjct 361514 GCAGACCGCCGTCCGGCTTCTGCTGCCCGGGGAGCTGGCCAAGCATGCAGTGTCTGAGGG 361455
Query 725138 CACCA 725142
||||
Sbjct 361454 GACCA 361450
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7176775789519070
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |