Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 125 6e-24
seq183 100 3e-16
>seq10555
Length=3328687
Score = 125 bits (138), Expect = 6e-24
Identities = 145/193 (75%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || ||| || |||| |||||||||||||| || ||
Sbjct 3318452 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAA 3318511
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | || | | |||||| || |||| || |||| ||
Sbjct 3318512 GATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGGATC-TTGGCTTTGACGT 3318570
Query 35665 T-GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
| | | |||||||| | |||||||||| ||||| || ||||| |||| || ||||
Sbjct 3318571 TCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCA 3318630
Query 35724 CAAATATCTGCAT 35736
|||| ||||||||
Sbjct 3318631 CAAAGATCTGCAT 3318643
Score = 122 bits (134), Expect = 8e-23
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || ||| || | || |||||||||||||| |||||
Sbjct 3315246 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAA 3315305
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|||| ||||||||||| | || | | |||||| ||| ||| || ||||| | |
Sbjct 3315306 GATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCCTGGATTTTAGCCTTCACATT 3315365
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | | ||||| || | ||||| || | ||||| || ||||| |||| || |||||
Sbjct 3315366 TTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCAC 3315425
Query 35725 AAATATCTGCAT 35736
|| ||||||||
Sbjct 3315426 GAAGATCTGCAT 3315437
Score = 116 bits (128), Expect = 3e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599
||||||||||| || |||||||| |||| | || || | || || |||||||||||
Sbjct 3315469 GTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCTTCAAGCTGCTTACCG 3315528
Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659
||||| |||| ||||||||||| | || | | |||||| || |||| || ||||
Sbjct 3315529 GCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCTTGGATC-TTGGCTTT 3315587
Query 35660 AGAGTT-GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGT 35718
||| | | |||||||| | ||||||||||| ||||| || ||||| || | ||
Sbjct 3315588 GACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTCTTACCAGTGAGGGT 3315647
Query 35719 TTTCACAAATATCTGCAT 35736
|| ||||| ||||||||
Sbjct 3315648 CTTGACAAAGATCTGCAT 3315665
Score = 116 bits (128), Expect = 3e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| || ||| || | || |||||||||||||| || ||
Sbjct 3315702 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAA 3315761
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||| ||||||||||| | ||||| || ||||| ||| |||| || |||| ||
Sbjct 3315762 GATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATC-TTGGCTTTGACGT 3315820
Query 35665 T-GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
| | | ||||| || | ||||| || | ||||| || || || |||| || ||||
Sbjct 3315821 TCTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCA 3315880
Query 35724 CAAATATCTGCAT 35736
| || ||||||||
Sbjct 3315881 CGAAGATCTGCAT 3315893
>seq183
Length=784777
Score = 100 bits (110), Expect = 3e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || || ||||| |||| |||||| || | || ||||||||||| || || ||
Sbjct 332121 CTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAA 332180
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
||||||| ||||||||| | |||| || || |||||| |||||| || | | |
Sbjct 332181 GATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATT 332240
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || | || ||||| | ||||| || || || || | || |||||
Sbjct 332241 CTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 332300
Query 35725 AAATATCTGCATT 35737
||| || ||||||
Sbjct 332301 AAAGATTTGCATT 332313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450733109133800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |