Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq10511 84.2 3e-11 >seq10511 Length=4527151 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 214082 CGTTTCGCACTGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATT 214141 || ||||| ||||| ||||| || || || || || || | ||| ||||||||| Sbjct 1120914 CGATTCGCTGTGGGTCACGAGGCCTTCGGTCTGGTCCCTGGCCTGATGATGTACGCCACC 1120855 Query 214142 ATCTGGCTGAGAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGG 214201 ||||||||||| || |||||| | ||||| ||| | |||| | ||||| || || ||| Sbjct 1120854 ATCTGGCTGAGGGAACACAACCGTGTTTGTGACATCATGAAGGAGGAGCATCCCGACTGG 1120795 Query 214202 AACGACGAACAGCTGTTCCAGATCACTCG 214230 |||| || | | ||||||| ||| || Sbjct 1120794 GACGATGAGCGCATCTTCCAGACCACACG 1120766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723243736706400