Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq10547 111 2e-19
seq4474 111 2e-19
seq10607 100 4e-16
>seq10547
Length=7526941
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | || || || |||| ||||||||||| | ||| | || |
Sbjct 2162723 CCTCATCTCTGCTGATGAGCTCATTTGAGTATGTAAGTCCAGGCATCAAACCTCTTTTCT 2162782
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||| | ||||||||||| || ||||| || ||||||||||| |||||||||||||
Sbjct 2162783 TCAGCCAGTAGATGGCAGCAAACGACCCAGAGAAAAAGATGCCTTCAACTGCTGCAAATG 2162842
Query 39759 CAACAAGTCTCTCTCC 39774
| | | |||||| ||
Sbjct 2162843 CTATCAATCTCTCCCC 2162858
>seq4474
Length=14602
Score = 111 bits (122), Expect = 2e-19
Identities = 106/136 (78%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | || || || || || || |||||||| || || | |||||
Sbjct 5246 CCTCATCTCTGCTGATGAGCTCATTGGAGAAGGTAAGGCCAGGCATGAGTCCTCTCTTTT 5187
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| || |||||||||||||| || || |||||||| ||||| || || ||||| |
Sbjct 5186 TGAGCCAGAAGATGGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACAGCAGCAAAGG 5127
Query 39759 CAACAAGTCTCTCTCC 39774
| || | ||| || ||
Sbjct 5126 CCACCACTCTTTCACC 5111
>seq10607
Length=2140885
Score = 100 bits (110), Expect = 4e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048
|||| || ||||| || | ||||||||| ||||| ||||||||||| ||||| ||||| |
Sbjct 832235 TAGTGCCTGCATTGAAGAGTGTAGGAGAAGCGTGGGTGAACCATTTCTCAGACAGCAGGT 832294
Query 70049 TGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCA 70108
|||| || |||||||| | | ||||| || ||| || || | || || | |||||
Sbjct 832295 TGTAGGTCTCAATAGCAGCAGCAATATCTTCCTTATGGATCCCAACTGCTACCCTCATCA 832354
Query 70109 ACATATGCTGAGGTCGTTCT 70128
||| ||||| || | ||||
Sbjct 832355 GCATGTGCTGTGGCCTTTCT 832374
Score = 96.9 bits (106), Expect = 5e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384
||||||||||| | ||| || ||||| || || || || || ||||| || ||||| |
Sbjct 830795 ATCTCTGTACACAAATTGCTGCATTTAATGGTGCCGAGGTTCTGCTGGTTGCTCTTCCTA 830854
Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444
|| ||||| || |||||||| || | ||||| ||||| ||| ||||||| || ||||||
Sbjct 830855 TTGCAGGCATCTTTGTAAAGCATGTAGGGAGTGCCAGTCTCAGTCTGAGACTCAATAATA 830914
Query 69445 G 69445
|
Sbjct 830915 G 830915
Score = 91.5 bits (100), Expect = 2e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
||||| |||||||| | |||||| || ||||| | ||| || || ||||| || | ||
Sbjct 829715 TGAAACTCCCCAGAGAGCACTCTGCGTGTGTAGAAATTGCTAGTGTATGGCTCAATGGAC 829774
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
|||||||| ||||||||||| || || || || || ||||| ||||| | || | |||
Sbjct 829775 TCATTATTACCCAGAATTTGGGCTGTGGAAGCGGTGGGCATCGGTGCAAGCAGAAGACTG 829834
Query 68839 TTTCTAAGACCAT 68851
|| | | |||||
Sbjct 829835 TTACGGATACCAT 829847
Score = 84.2 bits (92), Expect = 3e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| || || || ||||| || || || ||| ||| | || || || || || ||||
Sbjct 828728 TCCAGCCATAAAAGTGCATGCTAGTAAGCTTGCCATAGTTGGGCTCTGCAATGTGGATAT 828787
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
| | || ||||| || ||||||||||| ||||| || || ||||| || | | ||
Sbjct 828788 TGAGGGACTGACTCTGGTCGATGAAAGCCCCTCTGTCAGCAGCCATCTTGAGGACCACCT 828847
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609
| |||| ||| ||||| | ||||||| | | || || | ||||||||
Sbjct 828848 TCTGAGAAATCTCCCATACAGTCTTATACAACTCCTTCAAGTCATCTGG 828896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686816625425400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |