Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10547 111 2e-19 seq4474 111 2e-19 seq10607 100 4e-16 >seq10547 Length=7526941 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | || || || |||| ||||||||||| | ||| | || | Sbjct 2162723 CCTCATCTCTGCTGATGAGCTCATTTGAGTATGTAAGTCCAGGCATCAAACCTCTTTTCT 2162782 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| | ||||||||||| || ||||| || ||||||||||| ||||||||||||| Sbjct 2162783 TCAGCCAGTAGATGGCAGCAAACGACCCAGAGAAAAAGATGCCTTCAACTGCTGCAAATG 2162842 Query 39759 CAACAAGTCTCTCTCC 39774 | | | |||||| || Sbjct 2162843 CTATCAATCTCTCCCC 2162858 >seq4474 Length=14602 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | || || || || || || |||||||| || || | ||||| Sbjct 5246 CCTCATCTCTGCTGATGAGCTCATTGGAGAAGGTAAGGCCAGGCATGAGTCCTCTCTTTT 5187 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| || |||||||||||||| || || |||||||| ||||| || || ||||| | Sbjct 5186 TGAGCCAGAAGATGGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACAGCAGCAAAGG 5127 Query 39759 CAACAAGTCTCTCTCC 39774 | || | ||| || || Sbjct 5126 CCACCACTCTTTCACC 5111 >seq10607 Length=2140885 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 69989 TAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGAT 70048 |||| || ||||| || | ||||||||| ||||| ||||||||||| ||||| ||||| | Sbjct 832235 TAGTGCCTGCATTGAAGAGTGTAGGAGAAGCGTGGGTGAACCATTTCTCAGACAGCAGGT 832294 Query 70049 TGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCA 70108 |||| || |||||||| | | ||||| || ||| || || | || || | ||||| Sbjct 832295 TGTAGGTCTCAATAGCAGCAGCAATATCTTCCTTATGGATCCCAACTGCTACCCTCATCA 832354 Query 70109 ACATATGCTGAGGTCGTTCT 70128 ||| ||||| || | |||| Sbjct 832355 GCATGTGCTGTGGCCTTTCT 832374 Score = 96.9 bits (106), Expect = 5e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||||||||| | ||| || ||||| || || || || || ||||| || ||||| | Sbjct 830795 ATCTCTGTACACAAATTGCTGCATTTAATGGTGCCGAGGTTCTGCTGGTTGCTCTTCCTA 830854 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 || ||||| || |||||||| || | ||||| ||||| ||| ||||||| || |||||| Sbjct 830855 TTGCAGGCATCTTTGTAAAGCATGTAGGGAGTGCCAGTCTCAGTCTGAGACTCAATAATA 830914 Query 69445 G 69445 | Sbjct 830915 G 830915 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 ||||| |||||||| | |||||| || ||||| | ||| || || ||||| || | || Sbjct 829715 TGAAACTCCCCAGAGAGCACTCTGCGTGTGTAGAAATTGCTAGTGTATGGCTCAATGGAC 829774 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||||||||| || || || || || ||||| ||||| | || | ||| Sbjct 829775 TCATTATTACCCAGAATTTGGGCTGTGGAAGCGGTGGGCATCGGTGCAAGCAGAAGACTG 829834 Query 68839 TTTCTAAGACCAT 68851 || | | ||||| Sbjct 829835 TTACGGATACCAT 829847 Score = 84.2 bits (92), Expect = 3e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || || || ||||| || || || ||| ||| | || || || || || |||| Sbjct 828728 TCCAGCCATAAAAGTGCATGCTAGTAAGCTTGCCATAGTTGGGCTCTGCAATGTGGATAT 828787 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || ||||| || ||||||||||| ||||| || || ||||| || | | || Sbjct 828788 TGAGGGACTGACTCTGGTCGATGAAAGCCCCTCTGTCAGCAGCCATCTTGAGGACCACCT 828847 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGG 68609 | |||| ||| ||||| | ||||||| | | || || | |||||||| Sbjct 828848 TCTGAGAAATCTCCCATACAGTCTTATACAACTCCTTCAAGTCATCTGG 828896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686816625425400