Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq10547 89.7 4e-13
seq4474 87.8 1e-12
seq1481 84.2 2e-11
seq10548 82.4 6e-11
>seq10547
Length=7526941
Score = 89.7 bits (98), Expect = 4e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 44138 GCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTA 44197
|| ||||||| || |||||||| || || || || |||||||| ||||| | ||| |
Sbjct 2162843 GCATTTGCAGCAGTTGAAGGCATCTTTTTCTCTGGGTCGTTTGCTGCCATCTACTGGCTG 2162784
Query 44198 AAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256
|||||| |||||||||||||||| | || | ||||||||| | || || | |||||
Sbjct 2162783 AAGAAAAGAGGTTTGATGCCTGGACTTACATACTCAAATGAGCTCATCAGCAGAGATGA 2162725
>seq4474
Length=14602
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 43912 GCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971
||| ||||| ||| | | |||||||| ||||| ||||| || ||||||||||| || ||
Sbjct 4276 GCAGGAAGTGCAAGTGACTGAAGCACGCTGTTTCTATGGCTTCCAAATTGCCATGGAGAA 4335
Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019
||||| || || |||||||| | || || || || || ||||||||
Sbjct 4336 CATTCACTCTGAGATGTACAGCTTGCTTATTGACACCTATATCAAAGA 4383
>seq1481
Length=22706
Score = 84.2 bits (92), Expect = 2e-11
Identities = 82/106 (77%), Gaps = 6/106 (6%)
Strand=Plus/Plus
Query 19550 TGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTG--- 19606
|||||||||||||| | ||||||||||| ||||| |||||||| ||||| |||| |
Sbjct 21472 TGCACATTATAATATTTGATGAATTGGATGCAATATGTAAGCAGAGAGGAACTGGAGCGA 21531
Query 19607 ---TAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAA 19649
| |||||| ||||| ||||| || ||||| || ||||| ||
Sbjct 21532 GCAGCACTGGAGTTCATGATACTGTAGTGAATCAGCTTCTGTCCAA 21577
>seq10548
Length=3145370
Score = 82.4 bits (90), Expect = 6e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 47227 TTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAAA 47286
|||||||||||| |||| || ||||| | | || || || |||||||||||||||||
Sbjct 2056052 TTTAGGACTTTACAAAAAGTCTGGGAAGCTGGTTTTGCTTGGTTTAGACAATGCAGGAAA 2055993
Query 47287 AACGGCATTACTCCACATGCTCAAA 47311
||| ||||||| || |||||||||
Sbjct 2055992 AACAACATTACTACAAATGCTCAAA 2055968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397403999713675
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |