Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10547 89.7 4e-13 seq4474 87.8 1e-12 seq1481 84.2 2e-11 seq10548 82.4 6e-11 >seq10547 Length=7526941 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 44138 GCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTA 44197 || ||||||| || |||||||| || || || || |||||||| ||||| | ||| | Sbjct 2162843 GCATTTGCAGCAGTTGAAGGCATCTTTTTCTCTGGGTCGTTTGCTGCCATCTACTGGCTG 2162784 Query 44198 AAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 |||||| |||||||||||||||| | || | ||||||||| | || || | ||||| Sbjct 2162783 AAGAAAAGAGGTTTGATGCCTGGACTTACATACTCAAATGAGCTCATCAGCAGAGATGA 2162725 >seq4474 Length=14602 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 43912 GCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||| ||||| ||| | | |||||||| ||||| ||||| || ||||||||||| || || Sbjct 4276 GCAGGAAGTGCAAGTGACTGAAGCACGCTGTTTCTATGGCTTCCAAATTGCCATGGAGAA 4335 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||||| || || |||||||| | || || || || || |||||||| Sbjct 4336 CATTCACTCTGAGATGTACAGCTTGCTTATTGACACCTATATCAAAGA 4383 >seq1481 Length=22706 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 6/106 (6%) Strand=Plus/Plus Query 19550 TGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGTG--- 19606 |||||||||||||| | ||||||||||| ||||| |||||||| ||||| |||| | Sbjct 21472 TGCACATTATAATATTTGATGAATTGGATGCAATATGTAAGCAGAGAGGAACTGGAGCGA 21531 Query 19607 ---TAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAA 19649 | |||||| ||||| ||||| || ||||| || ||||| || Sbjct 21532 GCAGCACTGGAGTTCATGATACTGTAGTGAATCAGCTTCTGTCCAA 21577 >seq10548 Length=3145370 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 47227 TTTAGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAAA 47286 |||||||||||| |||| || ||||| | | || || || ||||||||||||||||| Sbjct 2056052 TTTAGGACTTTACAAAAAGTCTGGGAAGCTGGTTTTGCTTGGTTTAGACAATGCAGGAAA 2055993 Query 47287 AACGGCATTACTCCACATGCTCAAA 47311 ||| ||||||| || ||||||||| Sbjct 2055992 AACAACATTACTACAAATGCTCAAA 2055968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397403999713675