Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq10555 102 7e-17 seq183 93.3 4e-14 >seq10555 Length=3328687 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| ||||||| ||||| ||||| Sbjct 3318447 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTACCA 3318506 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| || || || || | ||||| ||||| ||||||| ||| Sbjct 3318507 GCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTG 3318566 Query 27171 AGGGTTTCTACAGTGTCTGT-GGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | |||| || || | || || || | || || ||||| || Sbjct 3318567 ACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAG-GTGATGGTCTTACCAGTCAGCGT 3318625 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 3318626 CTTCACAAAGATCTGCAT 3318643 >seq183 Length=784777 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || |||||||||||| || | |||| | ||||| ||||| || || Sbjct 332116 GTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCA 332175 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | ||| || || || || | || ||||| || ||||||| ||| Sbjct 332176 GCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTG 332235 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | ||||| || || || || | ||||| || || || Sbjct 332236 ACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 332295 Query 27231 TTCACAAAGATTTGCATAGCTGCTAA 27256 ||||||||||||||||| |||| || Sbjct 332296 TTCACAAAGATTTGCATTTCTGCAAA 332321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424878804637320