Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 102 7e-17
seq183 93.3 4e-14
>seq10555
Length=3328687
Score = 102 bits (112), Expect = 7e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||| || | |||| ||||||| ||||| |||||
Sbjct 3318447 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTACCA 3318506
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || |||||||| || || || || | ||||| ||||| ||||||| |||
Sbjct 3318507 GCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCTTGGATCTTGGCTTTG 3318566
Query 27171 AGGGTTTCTACAGTGTCTGT-GGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
| | | || | ||||| | |||| || || | || || || | || || ||||| ||
Sbjct 3318567 ACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAG-GTGATGGTCTTACCAGTCAGCGT 3318625
Query 27230 TTTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 3318626 CTTCACAAAGATCTGCAT 3318643
>seq183
Length=784777
Score = 93.3 bits (102), Expect = 4e-14
Identities = 144/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || ||||| || |||||||||||| || | |||| | ||||| ||||| || ||
Sbjct 332116 GTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCTTCCAGCTGCTTGCCA 332175
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | || | | ||| || || || || | || ||||| || ||||||| |||
Sbjct 332176 GCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTG 332235
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | | ||||| || || || || | ||||| || || ||
Sbjct 332236 ACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTC 332295
Query 27231 TTCACAAAGATTTGCATAGCTGCTAA 27256
||||||||||||||||| |||| ||
Sbjct 332296 TTCACAAAGATTTGCATTTCTGCAAA 332321
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424878804637320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |