Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq10607 111 2e-19 >seq10607 Length=2140885 Score = 111 bits (122), Expect = 2e-19 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 |||| |||| | ||||||||||||| | ||||||| ||||||| |||||||||||||| Sbjct 829745 TAGAAATTGCTAGTGTATGGCTCAATGGACTCATTATTACCCAGAATTTGGGCTGTGGAA 829804 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTT 118285 || |||||||| ||||| | ||||| |||||||||| ||| || Sbjct 829805 GCGGTGGGCATCGGTGCAAGCAGAAGACTGTTACGGATACCATT 829848 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 118739 CTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCC 118798 ||||||||| || ||||| | ||| || || ||||| || | ||||||||||| Sbjct 830770 CTCATCCTTGCTTGTATACTCCACAATCTCTGTACACAAATTGCTGCATTTAATGGTGCC 830829 Query 118799 CAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCC 118858 | ||||| || || ||| | || || ||||| |||||||||||||| || || || Sbjct 830830 GAGGTTCTGCTGGTTGCTCTTCCTATTGCAGGCATCTTTGTAAAGCATGTAGGGAGTGCC 830889 Query 118859 CGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 118894 ||||| || || |||| | |||||| | ||| || Sbjct 830890 AGTCTCAGTCTGAGACTCAATAATAGCATACCACAC 830925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618352213726600