Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq10607 87.8 2e-12 seq4474 84.2 3e-11 >seq10607 Length=2140885 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 104885 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAA 104944 |||||| | |||||| | ||||||| || |||||||| || || ||||||||||||||| Sbjct 830925 GTGTGGTATGCTATTATTGAGTCTCAGACTGAGACTGGCACTCCCTACATGCTTTACAAA 830866 Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004 || ||||| || ||||| || || |||| | || || || | |||| | Sbjct 830865 GATGCCTGCAATAGGAAGAGCAACCAGCAGAACCTCGGCACCATTAAATGCAGCAATTTG 830806 Query 105005 TGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 |||||||| || |||| | |||| ||| |||||| Sbjct 830805 TGTACAGAGATTGTGGAGTATACAAGCAAGGATGAG 830770 >seq4474 Length=14602 Score = 84.2 bits (92), Expect = 3e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 95168 AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAA 95227 ||||||| ||||||||||||||||||||| | | || |||||||| |||||||| |||| Sbjct 6013 AGAATCCCTTTGACTTCATGGAGAACATTTCCTTGGAGGGGAAGACCAACTTCTTTGAAA 6072 Query 95228 AGAGGGTTGGGGACTA 95243 || | ||||| || || Sbjct 6073 AGCGAGTTGGCGAGTA 6088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583182533691400