Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq10607 87.8 2e-12
seq4474 84.2 3e-11
>seq10607
Length=2140885
Score = 87.8 bits (96), Expect = 2e-12
Identities = 113/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 104885 GTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAA 104944
|||||| | |||||| | ||||||| || |||||||| || || |||||||||||||||
Sbjct 830925 GTGTGGTATGCTATTATTGAGTCTCAGACTGAGACTGGCACTCCCTACATGCTTTACAAA 830866
Query 104945 GACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTC 105004
|| ||||| || ||||| || || |||| | || || || | |||| |
Sbjct 830865 GATGCCTGCAATAGGAAGAGCAACCAGCAGAACCTCGGCACCATTAAATGCAGCAATTTG 830806
Query 105005 TGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040
|||||||| || |||| | |||| ||| ||||||
Sbjct 830805 TGTACAGAGATTGTGGAGTATACAAGCAAGGATGAG 830770
>seq4474
Length=14602
Score = 84.2 bits (92), Expect = 3e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 95168 AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAA 95227
||||||| ||||||||||||||||||||| | | || |||||||| |||||||| ||||
Sbjct 6013 AGAATCCCTTTGACTTCATGGAGAACATTTCCTTGGAGGGGAAGACCAACTTCTTTGAAA 6072
Query 95228 AGAGGGTTGGGGACTA 95243
|| | ||||| || ||
Sbjct 6073 AGCGAGTTGGCGAGTA 6088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583182533691400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |