Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq167 241 4e-58 seq10671 145 2e-29 seq10555 143 8e-29 seq183 136 1e-26 seq228 107 6e-18 seq10574 86.0 2e-11 >seq167 Length=797236 Score = 241 bits (266), Expect = 4e-58 Identities = 740/1126 (66%), Gaps = 25/1126 (2%) Strand=Plus/Minus Query 349202 ATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGTGTA 349261 || ||||| || | || ||||| || || ||||| | ||||| || ||| || Sbjct 619294 ATTGGAATTGACCTTGGAACTACCTACTCCTGTGTGGGTGTTTTCCAGCATGGCAAAGTT 619235 Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| ||||| || |||||||| ||||| ||||| || || || || ||||| || Sbjct 619234 GAAATCATTGCCAACGATCAAGGAAACAGGACAACTCCCAGCTATGTGGCGTTTACAGAC 619175 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 |||||| | | || || ||| |||| ||||| || | || ||||| || || || Sbjct 619174 ACTGAGAGGCTCATCGGAGATGCTGCCAAAAACCAGGTCGCCATGAATCCCAACAACACC 619115 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 |||||||||| ||||| || ||||| ||||| ||| |||| || || || Sbjct 619114 ATTTTTGATGCAAAGCGTCTGATTGGCAGAAGGTTTGATGACGCTGTGGTTCAGTCAGAC 619055 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | |||| | || |||| || | || | || || | || || | | ||||| Sbjct 619054 ATGAAACTCTGGCCCTTTAAAGT-GATC--AGTGATGGAGGCAAGCCGAAAGTGGAGGTG 618998 Query 349502 GAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTTAGT 349560 || || || || || || | |||||||| || || || || || ||||| | || Sbjct 618997 GAGTACAAGGGGGAGGTGAAG-ACCTTTTACCCTGAGGAGATCTCGTCTATGGTCCTTGT 618939 Query 349561 TAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTAC 349620 ||||||| ||| ||| ||||||| ||||| || | | ||| || |||| || || || Sbjct 618938 GAAAATGAGGGAGATTTCTGAAGCCTATTTGGGCCAGAGAGTCACCAATGCCGTAATCAC 618879 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || || || || || || ||||| | || || ||||||||||| ||||| Sbjct 618878 AGTCCCGGCTTACTTCAACGACTCCCAGAGGCAGGCGACCAAAGATGCTGGAGTGATTGC 618819 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | ||||| || ||||| || ||||| ||||| || || || ||||| || || || Sbjct 618818 TGGACTGAATGTGCTGAGAATCATCAATGAGCCCACAGCAGCCGCCATTGCCTACGGTCT 618759 Query 349741 TGATAA---AATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || | ||| | | || | ||| | || || ||||| || || || || || Sbjct 618758 GGACAAGGGCAAGAGAGGC---GAGAGGAATGTCCTGATCTTTGACTTGGGAGGAGGCAC 618702 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 |||||||| || | || || | || || || || ||||| || ||||| || ||||| Sbjct 618701 CTTTGATGTTTCTATCCTGACCATCGAGGATGGCATCTTTGAGGTGAAAGCCACAGCTGG 618642 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 || || || | ||||| ||||| ||||| ||||| | || || ||||| | || Sbjct 618641 AGACACTCACTTGGGTGGGGAAGACTTTGACAATCGCATGGTCCAACACTTTGTGGAGGA 618582 Query 349918 ATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAA 349976 || ||| | |||| || | || || | || || || | || | | | Sbjct 618581 GTTCAAGAG-GAAGCACAAGAAAGACATCACTCAGAACAAGAGGGCCGTCCGGAGGTTGA 618523 Query 349977 GAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAA 350036 | || || || || | || ||| | || | || || | | || || ||||| | Sbjct 618522 GGACAGCCTGCGAGAGAGCCAAGAGAACCCTGTCCTCCAGCTCTCAGGCCAGCATTGAGA 618463 Query 350037 TTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAG 350096 | || || || ||| || |||||||| | || || || | ||||| ||||| | Sbjct 618462 TCGACTCCCTGTATGAGGGTGTAGATTTCTACACCTCCATCACCAGAGCTCGCTTTGAGG 618403 Query 350097 A-ATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGAT 350155 | ||| | | || |||||||||| || | || || ||||| || | || | ||| Sbjct 618402 AGCTTAACTCT-GAGCTTTTTAGAGGCACCCTTGAACCGGTGGAGAAGGCTTTGAGAGAC 618344 Query 350156 GCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATT 350215 || |||||| || |||||| | || | || || |||||||| || ||| | | | Sbjct 618343 GCCAAAATGGATAAGTCCCAGATTCACGATATTGTGTTGGTTGGTGGCTCCACAAG-AAT 618285 Query 350216 CCAAAAGTTCAACAGTTACTATCT----GAGTTTTTTAATGGCAAAGAAC-CTTCTAGAT 350270 || ||| || ||| ||| ||| || || |||||||||| || | | | ||| Sbjct 618284 CCCCAAGATC--CAGAAACT-TCTGCAAGAATTCTTTAATGGCAGGGACCTCAACAAGAG 618228 Query 350271 CAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 | || |||||||| ||||| || || || || || || || ||||| Sbjct 618227 C-ATCAATCCAGACGAAGCAGTGGCTTACGGCGCGGCAGTGCAGGC 618183 >seq10671 Length=1829250 Score = 145 bits (160), Expect = 2e-29 Identities = 362/542 (67%), Gaps = 6/542 (1%) Strand=Plus/Minus Query 349766 aaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825 ||| | || ||||||||| | || ||||| || || ||||| || | | || ||||| Sbjct 1496346 AATGTCCTCATTTTTGATCTTGGGGGTGGCACCTTCGATGTGTCCATCTTGACCATTGAA 1496287 Query 349826 GAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTT 349885 || || || ||||| || ||| | || |||||||| || || | || |||||||| || Sbjct 1496286 GATGGTATCTTTGAGGTCAAATCCACCGCTGGTGACACTCACTTGGGCGGAGAAGACTTC 1496227 Query 349886 GATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGCTAAA-ATTGATAT 349944 || || ||| | || || ||| ||| ||| || ||||| ||||| || | || || Sbjct 1496226 GACAACCGTATGGTCAACCACTTTATTACAGAGTTCAAGCG-CAAGCACAAGAAGGACAT 1496168 Query 349945 TGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC 350004 | || || || || | ||||| || | ||||| || || || |||||||| | Sbjct 1496167 CAGCGACAACAAGAGGGCTGTCCGTCGTCTGCGTACTGCCTGCGAGCGCGCTAAGCGCAC 1496108 Query 350005 CTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTT 350064 | | || || | || || || ||||| || || || ||| ||| || ||||| Sbjct 1496107 CCTGTCCTCCAGCACTCAGGCCAGCATTGAGATCGACTCCCTTTATGAGGGTGTTGATTT 1496048 Query 350065 CTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAAC 350124 || | | || || || | ||||| ||||| || | | ||||| || | | || Sbjct 1496047 CTATACCTCAATCACCAGGGCTCGCTTTGAGGAGCTCAATGCTGATCTCTTCCGTGGTAC 1495988 Query 350125 AATGGATCCTGTGGAAAAAGTAT-TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATG 350183 |||| || || || || || | || ||||||||| || ||| |||||| ||| Sbjct 1495987 CTTGGACCCAGTTGAGAA-GTCTCTACGTGATGCAAAATTGGACAAGGCTCAGATCCATG 1495929 Query 350184 AAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGT 350243 | | || | ||||||||||| || ||||| || || | || || |||| || | Sbjct 1495928 ACATTGTCCTGGTTGGTGGTTCCACTCGTATCCCTAAGATCCAGAAGCTACTGCAAGACT 1495869 Query 350244 TTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGT 350302 | || || |||||||||| | ||| | || || || ||||| ||||| || ||||| Sbjct 1495868 TCTTCAACGGCAAAGAACTGAACAAGAGC-ATCAACCCCGATGAGGCTGTGGCTTATGGC 1495810 Query 350303 GC 350304 || Sbjct 1495809 GC 1495808 >seq10555 Length=3328687 Score = 143 bits (158), Expect = 8e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || ||||| || || || || || || || | || || |||||| Sbjct 3315226 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 3315285 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| ||||| ||||| || || || ||||| || |||||| Sbjct 3315286 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCC 3315345 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || |||||||| || ||||| ||||| | ||| ||| || ||||| || || | ||| Sbjct 3315346 TGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTC 3315405 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 3315406 TTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 Score = 122 bits (134), Expect = 3e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || ||| ||| || || || || || || || | || || |||||| Sbjct 3315454 AGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCT 3315513 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 ||||| || || || |||||||| ||||| ||||| ||||| || ||||| || ||||| Sbjct 3315514 TCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCT 3315573 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || ||||| || || ||||| | || ||||| || || | || | ||| Sbjct 3315574 TGGATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTC 3315633 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 3315634 TTACCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665 >seq183 Length=784777 Score = 136 bits (150), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || ||||| ||||| || || || || || ||||| | || ||||||||| Sbjct 331641 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 331700 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTA---GACGT-TGCTGATCAGGAGGAATTCCTTCTTT 140641 || || ||||| || |||||||| | || | |||||||| || ||||| || ||||| Sbjct 331701 TCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGGGGGAATGCCCTCTTT 331760 Query 140642 ATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAAC 140701 || || || || ||||| ||||| ||||| | || ||| ||||| ||||| || | Sbjct 331761 GTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGAT 331820 Query 140702 TGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| ||||| || || ||||| || |||||||| Sbjct 331821 GGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| || || || ||||| || || || || || || | || ||||||||| Sbjct 331873 AGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 331932 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || ||||| || |||||||| | | |||||||| || ||||| |||||||| ||| Sbjct 331933 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCC 331992 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | || ||| ||||| || || || | ||| Sbjct 331993 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTC 332052 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 332053 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 332084 >seq228 Length=588457 Score = 107 bits (118), Expect = 6e-18 Identities = 314/478 (66%), Gaps = 13/478 (3%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| || || || | || || || || |||||||| | || | || ||| Sbjct 47476 GCTATTGGCATTGACCTGGGCACGACCTACTCTTGTGTAGGAGTGTTCCAGCATGGAAAA 47417 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || || || ||||| || || || || |||||||| || || || || || || || Sbjct 47416 GTGGAGATCATTGCTAACGACCAGGGAAACAGAACCACCCCCAGCTATGTGGCTTTCACA 47357 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||| | ||||||| ||| |||||||||| |||| || || || || || Sbjct 47356 GACACAGAGAGGCTGATTGGAGATGCTGCAAAAAACCAAGTGGCCATGAACCCCAACAAC 47297 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 || || ||||| || ||| | || || || | |||||| ||| | || || Sbjct 47296 ACTGTGTTTGACGCCAAGAGGCTGATCGGCCGCAAGTTT----GACGATCCTGTCGTTCA 47241 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 || ||| | || || | || | || || | || || | || |||| | Sbjct 47240 GTCCGATATGAAGCACTGGCCCTCCCAAGTGGTC---AGCGATGGAGGAAAGCCAAAGGT 47184 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGG 349553 | | ||||| | || || || || || | |||||||| ||||| ||||| || |||| Sbjct 47183 TCAAGTTGAGCACAAGGGAGAGCAGAAG-ACCTTTTACCCTGAAGATATTTCCTCCATGG 47125 Query 349554 TTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTG 349613 || | || || ||| | |||||||| || || ||| | || | | || || |||| | Sbjct 47124 TTCTGGTGAAGATGTAAGAAATTGCAGAGGCCTATCTGGGACAGAAGGTGACAAATGCCG 47065 Query 349614 TTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGG 349671 ||||||||||||| ||||| || || || | ||| | || || ||||||||||| Sbjct 47064 TTATTACTGTACCTGCCTACTTCAACGACTCTCAGAGGCAGGCCACCAAAGATGCTGG 47007 >seq10574 Length=3104428 Score = 86.0 bits (94), Expect = 2e-11 Identities = 110/151 (73%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 350168 AAAAATCAGA--TTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTC 350225 |||| ||||| | ||||| | || | |||||||| || || |||||||| || | | Sbjct 750515 AAAAGTCAGAAATCAATGAAATCGTGCTTGTTGGTGGCTCCACTCGTATTCCCAAGATCC 750574 Query 350226 AACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATG 350285 | ||| | | ||||| || ||||||||||| || || ||| || || || || | Sbjct 750575 AGCAGCTCGTGAAGGAGTTCTTCAATGGCAAAGAGCCCTCCAGAGGCATCAACCCTGACG 750634 Query 350286 AAGCTGTTGCATATGGTGCTGCTGTTCAGGC 350316 ||||||| || ||||| |||||||| ||||| Sbjct 750635 AAGCTGTGGCTTATGGAGCTGCTGTGCAGGC 750665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515045988595205