Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq26 104 3e-17 seq4474 95.1 1e-14 >seq26 Length=1209078 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||| | ||| || ||||| ||||| ||| | || || ||||| || Sbjct 226386 GTGAAAATGTAACGGGGGCTAGCTGCATCTTTGCCTCCATTGATGCGAGTTCCGAACTGA 226445 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| ||||||| |||||||||||||||||||||||| ||| Sbjct 226446 CCGAGGGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTTTGAGCCAAGTTTACA 226505 Query 117425 ATCGT 117429 || || Sbjct 226506 ATGGT 226510 >seq4474 Length=14602 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | ||||| || || | |||||||||||| ||||| | ||| || Sbjct 5244 TCATCTCTGCTGATGAGCTCATTGGAGAAGGTAAGGCCAGGCATGAGTCCTCTCTTTTTG 5185 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| ||||||||| || ||||| ||||||||| ||||| ||| |||||||| Sbjct 5184 AGCCAGAAGATGGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACAGCAGCAAAGGCC 5125 Query 74892 AC 74893 || Sbjct 5124 AC 5123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547142570453000