Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq26 104 3e-17
seq4474 95.1 1e-14
>seq26
Length=1209078
Score = 104 bits (114), Expect = 3e-17
Identities = 98/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||| | ||| || ||||| ||||| ||| | || || ||||| ||
Sbjct 226386 GTGAAAATGTAACGGGGGCTAGCTGCATCTTTGCCTCCATTGATGCGAGTTCCGAACTGA 226445
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| |||| || || ||||| ||||||| |||||||||||||||||||||||| |||
Sbjct 226446 CCGAGGGGCTGCAGGATGTTCACGTTGTTGCTGCCCACAAAGTTTTGAGCCAAGTTTACA 226505
Query 117425 ATCGT 117429
|| ||
Sbjct 226506 ATGGT 226510
>seq4474
Length=14602
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | ||||| || || | |||||||||||| ||||| | ||| ||
Sbjct 5244 TCATCTCTGCTGATGAGCTCATTGGAGAAGGTAAGGCCAGGCATGAGTCCTCTCTTTTTG 5185
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| ||| ||||||||| || ||||| ||||||||| ||||| ||| ||||||||
Sbjct 5184 AGCCAGAAGATGGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACAGCAGCAAAGGCC 5125
Query 74892 AC 74893
||
Sbjct 5124 AC 5123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547142570453000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |