Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq10555 206 3e-48 seq183 170 2e-37 >seq10555 Length=3328687 Score = 206 bits (228), Expect = 3e-48 Identities = 182/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || || ||||| || ||||| || || ||| || || Sbjct 3315437 ATGCAGATCTTCGTGAAGACGCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315378 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| ||||||||||||| ||||| ||||||||||| || || |||||| Sbjct 3315377 GACACCATTGAAAATGTGAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCCGACCAG 3315318 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||||||||| || || |||| || ||||| | ||||| || Sbjct 3315317 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3315258 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || ||||| ||| ||||||| || || || Sbjct 3315257 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTGCGTCTCCGTGGCGG 3315211 Score = 168 bits (186), Expect = 8e-37 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || |||||||| || ||||| || || ||| || || Sbjct 3315893 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315834 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | || || || || ||||| ||||| || |||||||| |||||| Sbjct 3315833 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 3315774 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || || ||||||||||| || || |||| || ||||| | ||||| || Sbjct 3315773 CAGCGTTTGATCTTCGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3315714 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || ||||| ||| | ||||| Sbjct 3315713 ATCCAGAAGGAGTCCACCCTCCATCTCGTCCTCCGTCT 3315676 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| |||||||| || || ||||| || || | ||||| ||| || | Sbjct 3318643 ATGCAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCTTGGAGGTGGAGCCAAGC 3318584 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | || || || || || || ||||||||||| || || |||||| Sbjct 3318583 GACACCATCGAGAACGTCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCCGACCAG 3318524 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||||||||| || || || | || ||||| | ||||| || Sbjct 3318523 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTACAAC 3318464 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| | ||||| Sbjct 3318463 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTTCGTCT 3318426 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| || || | ||||| || | | Sbjct 3315665 ATGCAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCTTGGAGGTGGAACCCAGC 3315606 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | || || || || || || ||||||||||| || || |||||| Sbjct 3315605 GACACTATTGAGAACGTCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCTGACCAG 3315546 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| |||||||| || || |||| |||||| || | ||||| || Sbjct 3315545 CAGCGTCTGATCTTTGCCGGTAAGCAGCTTGAAGATGGTCGTACTCTCTCCGACTACAAC 3315486 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| || || || || ||| | ||||| Sbjct 3315485 ATCCAGAAGGAGAGTACCCTCCACCTTGTCCTCCGTCT 3315448 Score = 114 bits (126), Expect = 1e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| || |||||||| || ||||| || || ||| || | Sbjct 3318415 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCAAGC 3318356 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| ||||||||||||| || || ||||| || ||||| || |||||| Sbjct 3318355 GACACCATTGAAAATGTGAAGGCTAAAATCCAAGATAAGGAAGGCATTCCCCCTGACCAG 3318296 Query 27526 CAG 27528 ||| Sbjct 3318295 CAG 3318293 >seq183 Length=784777 Score = 170 bits (188), Expect = 2e-37 Identities = 169/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| || || |||||||| || || |||||||||||| || | Sbjct 332313 AATGCAAATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAAG 332254 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| ||| | || || || || |||||||| || || ||||| |||||||| Sbjct 332253 TGACACAATTGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCA 332194 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || || ||||| ||||| || || |||| || ||| | | ||||| || Sbjct 332193 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCTTGTCCGACTACAA 332134 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | |||| || || |||||||| ||||| ||| | ||||| Sbjct 332133 TATCCAGAAAGAGTCCACTCTCCATCTTGTCCTTCGTCT 332095 Score = 147 bits (162), Expect = 2e-30 Identities = 173/234 (74%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || |||||||||||| || | Sbjct 331856 ATGCAGATCTTCGTAAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 331797 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | || || || || || ||||| ||||| ||||| ||||| ||| Sbjct 331796 GACACCATTGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATTCCCCCAGATCAG 331737 Query 27526 CAG----CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||| | | || ||||| || || || || || |||| || ||||| | ||||| Sbjct 331736 CAGAGGTTGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTA 331677 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 || |||| ||||| |||||||| || || || ||||||| | || ||||| Sbjct 331676 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTGCTGCGTCTCAGGGGCGGACA 331623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570233871473200