Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq10523 136 5e-27 seq10712 109 7e-19 >seq10523 Length=3625887 Score = 136 bits (150), Expect = 5e-27 Identities = 237/345 (69%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 13692 GAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTC 13751 || || |||||||||| ||| || ||||| || | ||||| |||||||| ||| | ||| Sbjct 395485 GACTTCCCCATCGCCTTCTCCATGGTGATTCATGAGAAGATTGAGATGTTTGAGAGGCTC 395544 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGC 13811 ||| | ||||| ||| | || |||||| ||||||| |||||||||||| | ||||| | Sbjct 395545 CTGCGTGCCATTTACTCTCCTCAGAACATCTACTGTGTCCACGTGGACACGAAGTCGTCC 395604 Query 13812 GACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCC 13871 | || || || || || ||| ||| | || | || || ||| ||||| Sbjct 395605 AAGGAATTTATGGAGGCTGTGAAGGCTATCACATCTTGTCTGCCCAATGTGTTTGTGGCC 395664 Query 13872 CACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGC 13931 | || | ||||| |||| ||||||| ||| || || |||||| ||| |||| Sbjct 395665 AGCAAATTGGAGAGTGTGGTCTACGCCTCCTGGTCTCGAGTTCAAGCCGACATCAACTGC 395724 Query 13932 ATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATG 13991 ||| ||||| | || | || |||||||||||||||||||| || || Sbjct 395725 ATGCAAGACCTCCTCAAGTCGTCAGTGCAGTGGAGGTACCTGCTCAACACTTGTGGTGCA 395784 Query 13992 GACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAG 14036 || ||||| |||| ||||| ||||| || || | |||||| Sbjct 395785 GATTTCCCCATCAAAACCAATGCAGAGATGGTTCGAACCCTGAAG 395829 >seq10712 Length=1479189 Score = 109 bits (120), Expect = 7e-19 Identities = 242/360 (67%), Gaps = 11/360 (3%) Strand=Plus/Minus Query 13682 GGAAGAGGTCGAGTTTCCCA-TCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGT 13740 |||||||| | |||||| | || || || ||||| | || |||||| | ||| | Sbjct 1209494 GGAAGAGGCC----TTCCCACTGGCGTATTCCATCGTAGTTCATCACAAGGTGCAGAACT 1209439 Query 13741 TCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACT 13800 ||||||| || ||||| |||||||||| || |||||| | ||||| |||| ||||| Sbjct 1209438 TCGAGCGGCTTCTGAGATCCATCTACGCTCCTCAGAACTTTTACTGTATCCATGTGGATA 1209379 Query 13801 CCAAGTCCGGCGACGAGTTCATCCGGGGCG---TCTCGGCCATCGCCAGGTGCTTCCCTA 13857 ||| || ||| || | || | | || |||| || | ||||| | Sbjct 1209378 AAAAGGCCTCCGA---GTCAACTCGAGCAGCAATCAATGCCACCGTCTCCTGCTTTGACA 1209322 Query 13858 ACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGG 13917 | || | | ||| | |||| | || ||||| |||| | ||||||||| || |||| Sbjct 1209321 ATGTTTTCATTGCCAGTCAGCTGGAAGAGGTGGTCTACGCCAGCTGGAGTCGTGTCCAGG 1209262 Query 13918 CCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCA 13977 | ||| ||| ||||||| |||||| || | | | |||| |||| | | | Sbjct 1209261 CTGACATCAACTGCATGAAGGACCTTTACCAGATCAGTGACCGCTGGAAGTACTTCATTA 1209202 Query 13978 ACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGG 14037 |||| || || |||||| || | || |||||||||||||| ||||| || ||||||| Sbjct 1209201 ACCTTTGTGGTCAGGACTTTCCCATGAAAACCAACCTGGAGATGGTGCGTGCCCTGAAGG 1209142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658650805433600