Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq54 107 2e-18
>seq54
Length=1125963
Score = 107 bits (118), Expect = 2e-18
Identities = 127/171 (74%), Gaps = 6/171 (4%)
Strand=Plus/Minus
Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282
|||||| | || || || || | ||||||||||| || || || || ||||| || ||
Sbjct 982184 CATGTCTTTATATTCAGCACCATAGTGCCTCCACTGAAAACCATATACAGGTCCTAGATC 982125
Query 30283 TCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30339
|||||| |||| |||| || || |||||||||| ||||| | || || || ||
Sbjct 982124 TCCCTCCTCCC---GCTCAGTAAATCCACTCTTGTCCAGGAAGTCCCGTGACCCATTCGC 982068
Query 30340 GTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390
||||| |||||||| || ||||| || |||||||||| ||||| || ||
Sbjct 982067 ATCCCAAATCTTTACACCTTTCTCTGAAAGCTCTTTGGCATTTGTTGAACC 982017
Score = 93.3 bits (102), Expect = 3e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
|| || |||| ||| || |||||||| || || || | ||||| ||||| || || ||
Sbjct 982965 AGTCCTGTGATGTGTGCTATCATGTATGTCAGAAGGGCATAGCTTGCGATATTGAATGGA 982906
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061
|| || || || || |||||||| | |||||| | || || || || || || ||
Sbjct 982905 ACACCCAGACCGATATCCCCCGAGCGCTGGTATAATTGGCAAGACAGTTCACCCTCAGAG 982846
Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105
|| || ||||| |||| || ||||| || ||||||||||| ||
Sbjct 982845 ACATAGAACTGGCACAGAGCATGGCAGGGTGGAAGAGCCATCAG 982802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406257241267620
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |