Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq54 107 2e-18 >seq54 Length=1125963 Score = 107 bits (118), Expect = 2e-18 Identities = 127/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| | || || || || | ||||||||||| || || || || ||||| || || Sbjct 982184 CATGTCTTTATATTCAGCACCATAGTGCCTCCACTGAAAACCATATACAGGTCCTAGATC 982125 Query 30283 TCCCTCTTCCCTGTGCTC---GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC 30339 |||||| |||| |||| || || |||||||||| ||||| | || || || || Sbjct 982124 TCCCTCCTCCC---GCTCAGTAAATCCACTCTTGTCCAGGAAGTCCCGTGACCCATTCGC 982068 Query 30340 GTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||| |||||||| || ||||| || |||||||||| ||||| || || Sbjct 982067 ATCCCAAATCTTTACACCTTTCTCTGAAAGCTCTTTGGCATTTGTTGAACC 982017 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| || || || | ||||| ||||| || || || Sbjct 982965 AGTCCTGTGATGTGTGCTATCATGTATGTCAGAAGGGCATAGCTTGCGATATTGAATGGA 982906 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || || || |||||||| | |||||| | || || || || || || || Sbjct 982905 ACACCCAGACCGATATCCCCCGAGCGCTGGTATAATTGGCAAGACAGTTCACCCTCAGAG 982846 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| |||| || ||||| || ||||||||||| || Sbjct 982845 ACATAGAACTGGCACAGAGCATGGCAGGGTGGAAGAGCCATCAG 982802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406257241267620