Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq54 87.8 2e-12 >seq54 Length=1125963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||| | ||||||||||| || || || ||||| | || ||||| ||||| ||| | | Sbjct 982793 GATTTGCCTCTGATGGCTCTTCCACCCTGCCATGCTCTGTGCCAGTTCTATGTCTCTGAG 982852 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || || ||||| ||||| | || || || ||||| || || || | || || || ||| Sbjct 982853 GGTGAACTGTCTTGCCAATTATACCAGCGCTCGGGGGATATCGGTCTGGGTGTTCCATTC 982912 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || || || || || || || || || |||||||| || || Sbjct 982913 AATATCGCAAGCTATGCCCTTCTGACATACATGATAGCACA 982953 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| || || || || || || || || ||||| || || || | || Sbjct 982953 TGTGCTATCATGTATGTCAGAAGGGCATAGCTTGCGATATTGAATGGAACACCCAGACCG 982894 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 || || ||||| || || || | ||||| ||||| || || | | ||| ||||| ||| Sbjct 982893 ATATCCCCCGAGCGCTGGTATAATTGGCAAGACAGTTCACCCTCAGAGACATAGAACTGG 982834 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || | ||||| || || || ||||||||||| | ||| Sbjct 982833 CACAGAGCATGGCAGGGTGGAAGAGCCATCAGAGGCAAATC 982793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448202248789200