Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq54 87.8 2e-12
>seq54
Length=1125963
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||| | ||||||||||| || || || ||||| | || ||||| ||||| ||| | |
Sbjct 982793 GATTTGCCTCTGATGGCTCTTCCACCCTGCCATGCTCTGTGCCAGTTCTATGTCTCTGAG 982852
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
|| || ||||| ||||| | || || || ||||| || || || | || || || |||
Sbjct 982853 GGTGAACTGTCTTGCCAATTATACCAGCGCTCGGGGGATATCGGTCTGGGTGTTCCATTC 982912
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
|| || || || || || || || || |||||||| || ||
Sbjct 982913 AATATCGCAAGCTATGCCCTTCTGACATACATGATAGCACA 982953
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| || |||||||| || || || || || || || || ||||| || || || | ||
Sbjct 982953 TGTGCTATCATGTATGTCAGAAGGGCATAGCTTGCGATATTGAATGGAACACCCAGACCG 982894
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
|| || ||||| || || || | ||||| ||||| || || | | ||| ||||| |||
Sbjct 982893 ATATCCCCCGAGCGCTGGTATAATTGGCAAGACAGTTCACCCTCAGAGACATAGAACTGG 982834
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
|| || | ||||| || || || ||||||||||| | |||
Sbjct 982833 CACAGAGCATGGCAGGGTGGAAGAGCCATCAGAGGCAAATC 982793
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448202248789200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |