Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq183 86.0 4e-12 >seq183 Length=784777 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 27788 AAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA---AA 27844 |||||||||| |||||||| || || ||||| || || || |||| || || || Sbjct 332314 AAATGCAAATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAA 332255 Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | | || || | ||| |||||| || || ||||||||||| |||| | Sbjct 332254 GTGAC-ACAATTGAGAAT--GTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAG 332198 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| |||| || || || || || || |||| || | ||||| ||||||||| | Sbjct 332197 ACCAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCTTGTCCGACT 332138 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCAT 27993 |||| ||||| |||||| |||| | ||| Sbjct 332137 ACAATATCCAGAAAGAGTCCACTCTCCAT 332109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355815841521345