Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq10555 172 1e-37 seq183 172 1e-37 >seq10555 Length=3328687 Score = 172 bits (190), Expect = 1e-37 Identities = 168/215 (78%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || |||||||| || |||||||| || || | ||||| | ||||||| Sbjct 3315682 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 3315741 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| | || || ||||| ||||||| |||||||| ||| Sbjct 3315742 TCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCC 3315801 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| ||| ||||| || ||||||||| ||| || || ||||||||||| Sbjct 3315802 TGGATCTTGGCTTTGACGTTCTCAATGGTGTCA---CTTGGCTCCACTTCGAGAGTGATG 3315858 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | |||||| Sbjct 3315859 GTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893 Score = 165 bits (182), Expect = 2e-35 Identities = 168/218 (77%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | ||| ||| Sbjct 3318432 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 3318491 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || ||||| || || | ||| ||||| || Sbjct 3318492 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCT 3318551 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| ||| ||||| ||||||||||| |||| || ||||| | ||||| Sbjct 3318552 TGGATCTTGGCTTTGACGTTCTCGATGGTGTC---GCTTGGCTCCACCTCCAAGGTGATG 3318608 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| || || || ||||| ||||| | |||||| || Sbjct 3318609 GTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTT 3318646 Score = 159 bits (176), Expect = 8e-34 Identities = 165/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || |||||||| || |||||||| || || | ||||| | ||||||| Sbjct 3315226 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 3315285 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || || || ||||| || || | ||| ||||| ||| Sbjct 3315286 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCC 3315345 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||| || ||||| ||||| ||||||||| ||| || || ||||||||||| Sbjct 3315346 TGGATTTTAGCCTTCACATTTTCAATGGTGTCA---CTTGGCTCCACTTCGAGAGTGATG 3315402 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | |||||| Sbjct 3315403 GTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || || ||| || |||||||| || || | || || | |||||| Sbjct 3315454 AGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCT 3315513 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || ||||| || || || |||||||| || | ||| ||||| || Sbjct 3315514 TCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCT 3315573 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| ||||| || || ||||| | ||| ||||| | ||||| ||| Sbjct 3315574 TGGATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTC 3315633 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 3315634 TTACCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/125 (76%), Gaps = 6/125 (5%) Strand=Plus/Plus Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 || |||||||| |||| |||||||| || ||||| || ||||| ||||| |||||| Sbjct 3318294 TGCTGGTCAGGGGGAATGCCTTCCTTATCTTGGATTTTAGCCTTCACATTTTCAATGGTG 3318353 Query 211053 TCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 || |||| || || ||||||||||| ||||| || || || ||||| || || | | Sbjct 3318354 TC---GCTTGGCTCCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATC 3318410 Query 211110 TGCAT 211114 ||||| Sbjct 3318411 TGCAT 3318415 >seq183 Length=784777 Score = 172 bits (190), Expect = 1e-37 Identities = 169/217 (78%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || |||||||||||||| ||||| || || || | | ||| | ||||||| Sbjct 332101 AGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCT 332160 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| | | || ||||| || |||| ||||| |||||| Sbjct 332161 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 332220 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| ||| || || || || |||||| ||| |||||||| || ||||| Sbjct 332221 TGGATCTTGGCTTTGACATTCTCAATTGTGTCA---CTTGGCTCAACCTCAAGGGTGATG 332277 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 ||||| || ||||| ||||| ||||| | ||||||| Sbjct 332278 GTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCATTT 332314 Score = 159 bits (176), Expect = 8e-34 Identities = 165/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || ||||| ||||| |||||||| || || | ||||| | |||||| Sbjct 331873 AGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 331932 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || ||||| | | || || || || |||| ||||| |||||| Sbjct 331933 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCC 331992 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| |||||||| || |||||||| |||| ||||||||||| ||||| Sbjct 331993 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---GCTTGGCTCAACCTCGAGGGTGATG 332049 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| || || | |||||| Sbjct 332050 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 332084 Score = 134 bits (148), Expect = 3e-26 Identities = 162/219 (74%), Gaps = 10/219 (5%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| ||||||||||| || |||||||| || || | ||||| | |||||| Sbjct 331641 AGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 331700 Query 210963 TCCAGCTGCTTGCCTGCGAAGAT----AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 |||||||| ||||| || ||||| | | || || || || |||| || || || Sbjct 331701 TCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGGGGGAATGCCCTCTTT 331760 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGT 211075 ||| |||||||| ||| || || || |||||||| |||| |||||||| || || Sbjct 331761 GTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTC---GCTTGGCTCAACCTCAAGGGT 331817 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || || || |||||||| || | |||||| Sbjct 331818 GATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158992567698275