Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq183 116 3e-21
seq10555 98.7 7e-16
>seq183
Length=784777
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || || ||||| ||||| ||||| | |
Sbjct 332084 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC 332025
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | || || || ||||||||||| | || ||||||||
Sbjct 332024 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 331965
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
||| | || || |||||||||||||| |||||||| | ||||| | ||| ||||||
Sbjct 331964 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 331905
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || ||||| |||||
Sbjct 331904 ATCCAGAAAGAATCCAC 331888
Score = 111 bits (122), Expect = 1e-19
Identities = 146/200 (73%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 23609 AAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCA 23668
||||||| || || || || |||||||| || || || ||||| || || ||||| | |
Sbjct 332314 AAATGCAAATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCAA 332255
Query 23669 CGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
||||| |||| ||| | ||| | || | | ||||||||||| | || |||||
Sbjct 332254 GTGACACAATTGAGAATGTCAAAGCCAAGA-TCCAGGACAAAGAAGGCATTCCCCCAGAC 332196
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| ||| | || || || || ||||| || |||||||| | |||||| || ||| |||
Sbjct 332195 CAGCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCTTGTCCGACTAC 332136
Query 23788 AACATACAAAAAGAGTCCAC 23807
|| || || |||||||||||
Sbjct 332135 AATATCCAGAAAGAGTCCAC 332116
Score = 100 bits (110), Expect = 2e-16
Identities = 145/202 (72%), Gaps = 6/202 (3%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || ||||| || || || || ||||| || || ||||| | |
Sbjct 331856 ATGCAGATCTTCGTAAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCAAGC 331797
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | ||| | || | | |||||||| || | || ||||||||
Sbjct 331796 GACACCATTGAGAATGTCAAAGCCAAGA-TCCAAGACAAAGAGGGCATTCCCCCAGATCA 331738
Query 23730 ACAGCGTTTA----ATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATT 23785
||| | || || |||||||||||||| |||||||| | ||||| | || |
Sbjct 331737 GCAGAGGTTGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCTGACT 331678
Query 23786 ACAACATACAAAAAGAGTCCAC 23807
||||||| || || ||||||||
Sbjct 331677 ACAACATCCAGAAGGAGTCCAC 331656
>seq10555
Length=3328687
Score = 98.7 bits (108), Expect = 7e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || || || || || || |||||||||||||| || | |
Sbjct 3315437 ATGCAGATCTTCGTGAAGACGCTGACTGGTAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315378
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||||| | || ||||| || || || || | || || || ||
Sbjct 3315377 GACACCATTGAAAATGTGAAGGCTAAAATCCAGGATAAGGAGGGAATCCCACCCGACCAG 3315318
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||| | || ||||| || || || |||||||| | |||||| | ||| ||||||
Sbjct 3315317 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3315258
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||||||
Sbjct 3315257 ATCCAGAAGGAGTCCAC 3315241
Score = 98.7 bits (108), Expect = 7e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| ||||| || || || || || || || |||||||||||||| || | |
Sbjct 3315893 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAAGTGGAGCCAAGT 3315834
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
||||| |||| | | ||| || || || || ||||| | || || || ||
Sbjct 3315833 GACACCATTGAGAACGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 3315774
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|||||||| || || || || || || |||||||| | |||||| | ||| ||||||
Sbjct 3315773 CAGCGTTTGATCTTCGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAAC 3315714
Query 23791 ATACAAAAAGAGTCCAC 23807
|| || || ||||||||
Sbjct 3315713 ATCCAGAAGGAGTCCAC 3315697
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337965377253380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |