Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq183 138 3e-27 seq10555 131 4e-25 >seq183 Length=784777 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| ||||||||||| ||||| |||| |||||| |||| ||| || | |||||| Sbjct 332101 AGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGTCCATCT 332160 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | | || ||||| || ||||| ||||| ||||| Sbjct 332161 TCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 332220 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || ||| || || ||||| | || || || | ||||| ||| Sbjct 332221 TGGATCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTC 332280 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTT 225715 ||||| || | || || | || | |||||||| Sbjct 332281 TTGCCAGTGAGGGTCTTCACAAAGATTTGCATTT 332314 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || || ||||||||||| |||| ||||| |||| || || | ||||||| Sbjct 331873 AGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCT 331932 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || ||||| | | || || || || ||||| ||||| ||||| Sbjct 331933 TCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCC 331992 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| || |||||||| | || || || | ||||| ||| Sbjct 331993 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTC 332052 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 332053 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 332084 Score = 102 bits (112), Expect = 2e-16 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| || |||||||||||||| || || |||| ||||| || | || || | |||||| Sbjct 331640 CAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 331699 Query 225561 TTCTAGCTGCTTCCCAGCGAAGAT----AAGTCGTTGTTGGTCGGGCGGAATACCTTCCT 225616 ||| ||||| || || || ||||| | | || || || || ||||| || || | Sbjct 331700 TTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGGGGGAATGCCCTCTT 331759 Query 225617 TGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGA 225676 ||||||||||||| || ||| || |||||||| | || || || | |||| Sbjct 331760 TGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGA 331819 Query 225677 TCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||||||| |||| || |||| ||| | ||||| Sbjct 331820 TGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856 >seq10555 Length=3328687 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| || ||||| ||||| || || |||| ||||| |||| || || | |||||| Sbjct 3315682 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 3315741 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | || || |||||||| ||||| |||||||| || Sbjct 3315742 TCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCCTTATCC 3315801 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || || |||||||| | ||||| || | ||||| ||| Sbjct 3315802 TGGATCTTGGCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTC 3315861 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 3315862 TTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893 Score = 131 bits (144), Expect = 4e-25 Identities = 143/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| ||||| || || |||| ||||| |||| || || | || ||| Sbjct 3318432 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 3318491 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || |||||||| || || || ||||| ||| Sbjct 3318492 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCT 3318551 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || ||||||||||| | ||||| || || ||||| ||| Sbjct 3318552 TGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTC 3318611 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 3318612 TTACCAGTCA 3318621 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| || || || |||| ||||| |||| | ||| | |||||| Sbjct 3315454 AGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGACCATCT 3315513 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| || || || || ||||| ||| Sbjct 3315514 TCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCCTTATCT 3315573 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || || || || ||||| || |||||| || || ||||| ||| Sbjct 3315574 TGGATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGTGATGGTC 3315633 Query 225682 TTGCCCGT 225689 || || || Sbjct 3315634 TTACCAGT 3315641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192367176650090