Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq54 102 7e-17 >seq54 Length=1125963 Score = 102 bits (112), Expect = 7e-17 Identities = 111/146 (76%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 30020 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC---GAAG 30076 ||||||||||| || || || || ||||| || |||||||| |||| |||| || Sbjct 982159 TGCCTCCACTGAAAACCATATACAGGTCCTAGATCTCCCTCCTCCC---GCTCAGTAAAT 982103 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 || |||||||||| ||||| | || || || || ||||| |||||||| || ||||| Sbjct 982102 CCACTCTTGTCCAGGAAGTCCCGTGACCCATTCGCATCCCAAATCTTTACACCTTTCTCT 982043 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || |||||||||| ||||| || || Sbjct 982042 GAAAGCTCTTTGGCATTTGTTGAACC 982017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406110060526210