Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq54 89.7 4e-13 >seq54 Length=1125963 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| || || || | ||||| ||||| || || || Sbjct 982965 AGTCCTGTGATGTGTGCTATCATGTATGTCAGAAGGGCATAGCTTGCGATATTGAATGGA 982906 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || || || |||||||| | |||||| | || || || || || || || Sbjct 982905 ACACCCAGACCGATATCCCCCGAGCGCTGGTATAATTGGCAAGACAGTTCACCCTCAGAG 982846 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | || ||||| || ||||||||||| || Sbjct 982845 ACATAGAACTGGCACAGAGCATGGCAGGGTGGAAGAGCCATCAG 982802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369458856333785