Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10607 98.7 1e-15 >seq10607 Length=2140885 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 77355 GATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAAT 77414 |||||| ||| |||||||| ||||| | |||| | ||||| || | |||||| Sbjct 830172 GATCCAGCATAGGTTTCATACGGTCCATGCTCAGCAGCCAACTCACAGCTGGATTCCAAG 830231 Query 77415 GCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCA 77474 || |||| || || ||||| || |||| ||||||| ||| ||||| ||| || Sbjct 830232 GCAGCGTAGTAGATGGTTTCAAAGATCTGTGTATTGAGGAGTTGAGCTTCTGCACTTTCG 830291 Query 77475 AACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGT 77534 || || || | | || ||||| ||||| || | ||||| |||||||||||||| || Sbjct 830292 AAAGGGAAACGCATGAGTATAAAAGCATCAGCCAGGCCCTGCACTCCAATACCAATGGGC 830351 Query 77535 CTATGTCTCTTATTGGA 77551 || || | ||| ||||| Sbjct 830352 CTGTGGCGCTTGTTGGA 830368 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| ||||| | ||| || ||||| || ||||| || || || ||||||||||| || Sbjct 830795 ATCTCTGTACACAAATTGCTGCATTTAATGGTGCCGAGGTTCTGCTGGTTGCTCTTCCTA 830854 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATA 77852 ||||| | || || ||||| || | ||||| || || ||| |||| || || |||||| Sbjct 830855 TTGCAGGCATCTTTGTAAAGCATGTAGGGAGTGCCAGTCTCAGTCTGAGACTCAATAATA 830914 Query 77853 G 77853 | Sbjct 830915 G 830915 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 |||| ||||| ||||||||||| ||||| |||||| ||| || |||| || || || Sbjct 831356 ACTCTCTTCATGAAGAGATCAGGAATCCACAGAGCATAAAACAGGTCTCTGGCCCTCTGC 831415 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| || || || ||||| || || || || || || | || ||| | |||||||| Sbjct 831416 TCTTCTTTACCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAAGATGTCAAAGTGCCATGGC 831475 Query 78123 TCTAGATATATTGCCATAACTCCAGG 78148 || || || || || | ||||||| Sbjct 831476 TCAAGGTACATGGCAAATGCTCCAGG 831501 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || || || |||||||| || || ||| ||| | || || || || || |||| Sbjct 828728 TCCAGCCATAAAAGTGCATGCTAGTAAGCTTGCCATAGTTGGGCTCTGCAATGTGGATAT 828787 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | |||||||| || ||||||||||| ||||| ||||| ||||| || | | || Sbjct 828788 TGAGGGACTGACTCTGGTCGATGAAAGCCCCTCTGTCAGCAGCCATCTTGAGGACCACCT 828847 Query 76969 TTTGAGGAATTTCCCAAATAGTTTT 76993 | |||| ||| ||||| | ||| || Sbjct 828848 TCTGAGAAATCTCCCATACAGTCTT 828872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694575584130400