Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10607 95.1 2e-14 seq4474 93.3 6e-14 >seq10607 Length=2140885 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 75935 CCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCG 75994 || |||||| || |||||| ||| ||||| || | || | || |||| | || Sbjct 830157 CCTTTGCTAACAGGAGATCCAGCATAGGTTTCATACGGTCCATGCTCAGCAGCCAACTCA 830216 Query 75995 CAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGC 76054 || || | || || ||| |||| || || ||||| || |||| |||| || ||| Sbjct 830217 CAGCTGGATTCCAAGGCAGCGTAGTAGATGGTTTCAAAGATCTGTGTATTGAGGAGTTGA 830276 Query 76055 GCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACT 76114 ||||| ||| || ||||| || | | || ||||| ||||| || || ||||| ||| Sbjct 830277 GCTTCTGCACTTTCGAAAGGGAAACGCATGAGTATAAAAGCATCAGCCAGGCCCTGCACT 830336 Query 76115 CCAATACCAATAGGTCTATGTCTCTTATTGGA 76146 ||||||||||| || || || | ||| ||||| Sbjct 830337 CCAATACCAATGGGCCTGTGGCGCTTGTTGGA 830368 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||| |||||||| || | ||||||||| || || ||||||||||| ||||| || || || Sbjct 832236 AGTGCCTGCATTGAAGAGTGTAGGAGAAGCGTGGGTGAACCATTTCTCAGACAGCAGGTT 832295 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||| || |||||| | || | ||||| | ||| || || || || || | ||||| Sbjct 832296 GTAGGTCTCAATAGCAGCAGCAATATCTTCCTTATGGATCCCAACTGCTACCCTCATCAG 832355 Query 77113 CATATGCTGAGGTCGTTCTACA 77134 ||| ||||| || | |||| || Sbjct 832356 CATGTGCTGTGGCCTTTCTGCA 832377 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| || || || |||||||| || || ||| ||| | || || || || || |||| Sbjct 828728 TCCAGCCATAAAAGTGCATGCTAGTAAGCTTGCCATAGTTGGGCTCTGCAATGTGGATAT 828787 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | |||||||| || ||||||||||| ||||| ||||| ||||| || | | || Sbjct 828788 TGAGGGACTGACTCTGGTCGATGAAAGCCCCTCTGTCAGCAGCCATCTTGAGGACCACCT 828847 Query 75564 TTTGAGGAATTTCCCAAATAGTTTT 75588 | |||| ||| ||||| | ||| || Sbjct 828848 TCTGAGAAATCTCCCATACAGTCTT 828872 >seq4474 Length=14602 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | || || || || || || |||||||| ||||| | ||||||| Sbjct 5244 TCATCTCTGCTGATGAGCTCATTGGAGAAGGTAAGGCCAGGCATGAGTCCTCTCTTTTTG 5185 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || || || || ||||| || || ||||| || ||||| ||||| || || || Sbjct 5184 AGCCAGAAGATGGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACAGCAGCAAAGGCC 5125 Query 46774 ACAAGTCTCTCTCC 46787 || | ||| || || Sbjct 5124 ACCACTCTTTCACC 5111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712838733115200