Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq10607 95.1 2e-14
seq4474 93.3 6e-14
>seq10607
Length=2140885
Score = 95.1 bits (104), Expect = 2e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 75935 CCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCG 75994
|| |||||| || |||||| ||| ||||| || | || | || |||| | ||
Sbjct 830157 CCTTTGCTAACAGGAGATCCAGCATAGGTTTCATACGGTCCATGCTCAGCAGCCAACTCA 830216
Query 75995 CAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGC 76054
|| || | || || ||| |||| || || ||||| || |||| |||| || |||
Sbjct 830217 CAGCTGGATTCCAAGGCAGCGTAGTAGATGGTTTCAAAGATCTGTGTATTGAGGAGTTGA 830276
Query 76055 GCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACT 76114
||||| ||| || ||||| || | | || ||||| ||||| || || ||||| |||
Sbjct 830277 GCTTCTGCACTTTCGAAAGGGAAACGCATGAGTATAAAAGCATCAGCCAGGCCCTGCACT 830336
Query 76115 CCAATACCAATAGGTCTATGTCTCTTATTGGA 76146
||||||||||| || || || | ||| |||||
Sbjct 830337 CCAATACCAATGGGCCTGTGGCGCTTGTTGGA 830368
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052
||| |||||||| || | ||||||||| || || ||||||||||| ||||| || || ||
Sbjct 832236 AGTGCCTGCATTGAAGAGTGTAGGAGAAGCGTGGGTGAACCATTTCTCAGACAGCAGGTT 832295
Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112
||| || |||||| | || | ||||| | ||| || || || || || | |||||
Sbjct 832296 GTAGGTCTCAATAGCAGCAGCAATATCTTCCTTATGGATCCCAACTGCTACCCTCATCAG 832355
Query 77113 CATATGCTGAGGTCGTTCTACA 77134
||| ||||| || | |||| ||
Sbjct 832356 CATGTGCTGTGGCCTTTCTGCA 832377
Score = 86.0 bits (94), Expect = 9e-12
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503
|||| || || || |||||||| || || ||| ||| | || || || || || ||||
Sbjct 828728 TCCAGCCATAAAAGTGCATGCTAGTAAGCTTGCCATAGTTGGGCTCTGCAATGTGGATAT 828787
Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563
| | |||||||| || ||||||||||| ||||| ||||| ||||| || | | ||
Sbjct 828788 TGAGGGACTGACTCTGGTCGATGAAAGCCCCTCTGTCAGCAGCCATCTTGAGGACCACCT 828847
Query 75564 TTTGAGGAATTTCCCAAATAGTTTT 75588
| |||| ||| ||||| | ||| ||
Sbjct 828848 TCTGAGAAATCTCCCATACAGTCTT 828872
>seq4474
Length=14602
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| || || | || || || || || || |||||||| ||||| | |||||||
Sbjct 5244 TCATCTCTGCTGATGAGCTCATTGGAGAAGGTAAGGCCAGGCATGAGTCCTCTCTTTTTG 5185
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
||||| || || || || ||||| || || ||||| || ||||| ||||| || || ||
Sbjct 5184 AGCCAGAAGATGGCAGCAAAAGAACCTGAGAAGAAGATTCCTTCCACAGCAGCAAAGGCC 5125
Query 46774 ACAAGTCTCTCTCC 46787
|| | ||| || ||
Sbjct 5124 ACCACTCTTTCACC 5111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712838733115200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |