Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq183 140 7e-28 seq10555 127 5e-24 >seq183 Length=784777 Score = 140 bits (154), Expect = 7e-28 Identities = 168/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||||||||| ||||| |||||||| ||||| ||||| |||| || || Sbjct 332091 CCTGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGT 332150 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || |||||||| | |||||||||||| | | || || Sbjct 332151 GCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCC 332210 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 ||| || || || || || ||||||| |||| | |||| ||| ||| || || Sbjct 332211 TTCTTTGTCCTGGATCTTGGCTTTGACATTCTCAATTGTGTC---ACTTGGCTCAACCTC 332267 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106 ||| || || || ||||| ||||| |||||||| |||| ||||||| Sbjct 332268 AAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCATTT 332314 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | ||||||||||| || || || ||||| ||||||||||| |||| | || Sbjct 331863 CCTGAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 331922 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||||||| || ||| ||||| ||||| | ||||||||| || | | || || Sbjct 331923 GCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCC 331982 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||| || || || || || || || |||| | | |||| ||| || || || Sbjct 331983 TTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAG 332042 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || ||||||||||||| |||||| Sbjct 332043 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 332084 Score = 109 bits (120), Expect = 1e-18 Identities = 160/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 |||||| | || || || || ||||| ||||| || ||||||||||| || | | || Sbjct 331631 CCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 331690 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGAT----AAGCCTCTGCTGGTCCGCCGAGA 151998 | ||||||||| || ||| ||||| ||||| | ||||||||| || | | | Sbjct 331691 GCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGGGGGAA 331750 Query 151999 TTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTT 152058 | || || || ||||| || || ||||||| |||| | | |||| ||| || | Sbjct 331751 TGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTTGGCTCAACCT 331810 Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||| || || || ||||| || || ||||| ||||||| |||||| Sbjct 331811 CAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856 >seq10555 Length=3328687 Score = 127 bits (140), Expect = 5e-24 Identities = 164/225 (73%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| ||||| || || ||||| || ||||||||||| |||| | || Sbjct 3315672 CCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 3315731 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || |||||||| | | ||||||||| | | || || Sbjct 3315732 GCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCC 3315791 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059 |||||| || || || || |||||| |||| | | |||| ||| ||| ||||| Sbjct 3315792 TTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTC---ACTTGGCTCCACTTC 3315848 Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| || || ||||||||||||| |||||| Sbjct 3315849 GAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || ||||| || ||||||||||| |||| | || | |||||| Sbjct 3315226 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 3315285 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| || | ||||||||| | | |||||| ||||| || Sbjct 3315286 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCC 3315345 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| || ||| | || | | |||| ||| ||| ||||| ||||| || Sbjct 3315346 TGGATTTTAGCCTTCACATTTTCAATGGTGTC---ACTTGGCTCCACTTCGAGAGTGATG 3315402 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||||||||||| |||||| Sbjct 3315403 GTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 Score = 111 bits (122), Expect = 4e-19 Identities = 161/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||||||||| || || ||| ||| || ||||||||||| |||| | ||| Sbjct 3315444 CCTCAGACGGAGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGT 3315503 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || ||||| ||||| || | ||||||||| | | |||||| Sbjct 3315504 ACGACCATCTTCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCC 3315563 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCA 152060 ||||| ||||| || || |||||| |||| | ||| ||| || | || || Sbjct 3315564 CTCCTTATCTTGGATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTC-CACCTCCA 3315622 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || ||||| ||||| || |||| |||||| Sbjct 3315623 AG-GTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665 Score = 107 bits (118), Expect = 4e-18 Identities = 157/221 (71%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | || ||| Sbjct 3318432 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 3318491 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| || | ||||||||| | | |||||| ||||| ||| Sbjct 3318492 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCT 3318551 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || |||||| |||| | | |||| ||| || || | || || || Sbjct 3318552 TGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTC 3318611 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTACCCT 152112 || || || || |||||||| |||| |||||| ||||| || Sbjct 3318612 TTACCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGCT 3318652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153662100963185