Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq183 140 7e-28
seq10555 127 5e-24
>seq183
Length=784777
Score = 140 bits (154), Expect = 7e-28
Identities = 168/227 (74%), Gaps = 6/227 (3%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | ||||||||||| ||||| |||||||| ||||| ||||| |||| || ||
Sbjct 332091 CCTGAGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGT 332150
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || || || |||||||| | |||||||||||| | | || ||
Sbjct 332151 GCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCC 332210
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059
||| || || || || || ||||||| |||| | |||| ||| ||| || ||
Sbjct 332211 TTCTTTGTCCTGGATCTTGGCTTTGACATTCTCAATTGTGTC---ACTTGGCTCAACCTC 332267
Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106
||| || || || ||||| ||||| |||||||| |||| |||||||
Sbjct 332268 AAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCATTT 332314
Score = 122 bits (134), Expect = 2e-22
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | ||||||||||| || || || ||||| ||||||||||| |||| | ||
Sbjct 331863 CCTGAGACGAAGGACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 331922
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| ||||||||| || ||| ||||| ||||| | ||||||||| || | | || ||
Sbjct 331923 GCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCC 331982
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062
||| || || || || || || || |||| | | |||| ||| || || ||
Sbjct 331983 TTCTTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAG 332042
Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || ||||| || || ||||||||||||| ||||||
Sbjct 332043 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 332084
Score = 109 bits (120), Expect = 1e-18
Identities = 160/226 (71%), Gaps = 4/226 (2%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
|||||| | || || || || ||||| ||||| || ||||||||||| || | | ||
Sbjct 331631 CCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 331690
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGAT----AAGCCTCTGCTGGTCCGCCGAGA 151998
| ||||||||| || ||| ||||| ||||| | ||||||||| || | | |
Sbjct 331691 GCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGGGGGAA 331750
Query 151999 TTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTT 152058
| || || || ||||| || || ||||||| |||| | | |||| ||| || |
Sbjct 331751 TGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCAATGGTGTCGCTTGGCTCAACCT 331810
Query 152059 CAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|||| || || || ||||| || || ||||| ||||||| ||||||
Sbjct 331811 CAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCAT 331856
>seq10555
Length=3328687
Score = 127 bits (140), Expect = 5e-24
Identities = 164/225 (73%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| || | |||||| ||||| || || ||||| || ||||||||||| |||| | ||
Sbjct 3315672 CCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 3315731
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || || || |||||||| | | ||||||||| | | || ||
Sbjct 3315732 GCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCC 3315791
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTC 152059
|||||| || || || || |||||| |||| | | |||| ||| ||| |||||
Sbjct 3315792 TTCCTTATCCTGGATCTTGGCTTTGACGTTCTCAATGGTGTC---ACTTGGCTCCACTTC 3315848
Query 152060 AAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || || ||||| || || ||||||||||||| ||||||
Sbjct 3315849 GAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893
Score = 118 bits (130), Expect = 2e-21
Identities = 156/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| ||||| || || ||||| || ||||||||||| |||| | || | ||||||
Sbjct 3315226 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCT 3315285
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || || ||||| || | ||||||||| | | |||||| ||||| ||
Sbjct 3315286 TCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCC 3315345
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069
|| ||||| || ||| | || | | |||| ||| ||| ||||| ||||| ||
Sbjct 3315346 TGGATTTTAGCCTTCACATTTTCAATGGTGTC---ACTTGGCTCCACTTCGAGAGTGATG 3315402
Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || ||||||||||||| ||||||
Sbjct 3315403 GTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437
Score = 111 bits (122), Expect = 4e-19
Identities = 161/224 (72%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942
||| || | ||||||||| || || ||| ||| || ||||||||||| |||| | |||
Sbjct 3315444 CCTCAGACGGAGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGT 3315503
Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002
| |||||||| || || ||||| ||||| || | ||||||||| | | ||||||
Sbjct 3315504 ACGACCATCTTCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCC 3315563
Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCA 152060
||||| ||||| || || |||||| |||| | ||| ||| || | || ||
Sbjct 3315564 CTCCTTATCTTGGATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTC-CACCTCCA 3315622
Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || || ||||| ||||| || |||| ||||||
Sbjct 3315623 AG-GTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665
Score = 107 bits (118), Expect = 4e-18
Identities = 157/221 (71%), Gaps = 1/221 (0%)
Strand=Plus/Plus
Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952
||||| || || || || ||||| || ||||||||||| |||| | || | || |||
Sbjct 3318432 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCT 3318491
Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| || || || |||||||| || | ||||||||| | | |||||| ||||| |||
Sbjct 3318492 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCT 3318551
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
|| || || |||||| |||| | | |||| ||| || || | || || ||
Sbjct 3318552 TGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGTGATGGTC 3318611
Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTACCCT 152112
|| || || || |||||||| |||| |||||| ||||| ||
Sbjct 3318612 TTACCAGTCAGCGTCTTCACAAAGATCTGCATCTTTACGCT 3318652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153662100963185
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |