Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq10555 145 5e-30 seq183 131 1e-25 >seq10555 Length=3328687 Score = 145 bits (160), Expect = 5e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | || ||||| || || |||||||| ||||||||||| || Sbjct 3315435 CATACCTCCCCTCAGACGGAGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTC 3315494 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || | || || |||||||| ||||||||||||| ||||||||| || | Sbjct 3315495 GGAGAGAGTACGACCATCTTCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGG 3315554 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| |||| | |||| | || |||||| || || Sbjct 3315555 TGGGATTCCCTCCTTATCTTGGATCTT-GGCTTTGACGTTCTCAATAGTGTCGCTGGGTT 3315613 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || ||||||||||| || ||||| ||||| Sbjct 3315614 CCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665 Score = 136 bits (150), Expect = 3e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | |||||||| || ||| |||||| ||||||||||| || Sbjct 3318413 CATACCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 3318472 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| |||| ||||||||||| || || ||||||| ||||||||| || | Sbjct 3318473 GGACAGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGG 3318532 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | || ||||| || ||||| |||| | |||| | ||||||||| | | Sbjct 3318533 TGGGATTCCCTCCTTATCTTGGATCTT-GGCTTTGACGTTCTCGATGGTGTCGCTTGGCT 3318591 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || || || |||||||| ||||| ||||| Sbjct 3318592 CCACCTCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 3318643 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | || || || || ||| |||||| ||||||||||| || Sbjct 3315663 CATACCTCCCCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 3315722 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || ||||||||||| || || ||||||||||||||||| || | Sbjct 3315723 GGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGG 3315782 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| ||| ||||| |||| | |||| | |||||||| | | Sbjct 3315783 AGGAATGCCTTCCTTATCCTGGATCTT-GGCTTTGACGTTCTCAATGGTGTCACTTGGCT 3315841 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || | || || ||||| || || || |||||||||||||| ||||| Sbjct 3315842 CCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| |||||| ||||||||||| |||| || ||| | || ||| Sbjct 3315229 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 3315288 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || |||||||||| ||||||||| || | || | || ||||| ||| Sbjct 3315289 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCCTGG 3315348 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 || || ||||| || | |||||||| | ||||| || | || || ||||| Sbjct 3315349 ATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTA 3315408 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || |||||||||||||| ||||| Sbjct 3315409 CCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 >seq183 Length=784777 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || || || ||| || || ||||||||||| |||| || |||| | || ||| Sbjct 331876 ACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 331935 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 ||||| || |||||||||||||| | ||||||||||| || | ||||| || ||| Sbjct 331936 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGG 331995 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| |||| | |||| | ||||||||| | || ||||| | || || ||||| Sbjct 331996 ATCTTGGCCTTC-ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTT 332054 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || ||||||||||||||||| |||||| Sbjct 332055 GCCAGTCAGGGTCTTCACGAAGATCTGCATG 332085 Score = 122 bits (134), Expect = 6e-23 Identities = 169/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || || || | || ||||||||| || ||| |||||| ||||||||||| || | Sbjct 331625 TCCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 331684 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGAT----CAAACGCTGCTGATCTG 44225 || |||| | || |||||||| || ||||||||||| ||| | ||||||||||| Sbjct 331685 CAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTG 331744 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 || | || || || || ||||| |||| | ||| | ||||||||| | Sbjct 331745 GGGGAATGCCCTCTTTGTCTTGGATCTT-GGCTTTGACATTCTCAATGGTGTCGCTTGGC 331803 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || ||||| | || || ||||| || || |||||||| |||||||| |||||| Sbjct 331804 TCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCATG 331857 Score = 105 bits (116), Expect = 5e-18 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187 || || || || ||| ||| || ||||| ||||| |||| | || || || | || || Sbjct 332104 ACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTG-CGTCCATCTTC 332162 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||| || || |||||||| | |||||| |||| || | ||||| || ||| Sbjct 332163 CAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 332222 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| | ||| | || ||||| | || ||||| | || || |||| Sbjct 332223 GATCTT-GGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCT 332281 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||||||||||||| ||||||||||| Sbjct 332282 TGCCAGTGAGGGTCTTCACAAAGATTTGCAT 332312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359943301443495