Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 145 5e-30
seq183 131 1e-25
>seq10555
Length=3328687
Score = 145 bits (160), Expect = 5e-30
Identities = 173/232 (75%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || ||||| | | || ||||| || || |||||||| ||||||||||| ||
Sbjct 3315435 CATACCTCCCCTCAGACGGAGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTC 3315494
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| ||| || | || || |||||||| ||||||||||||| ||||||||| || |
Sbjct 3315495 GGAGAGAGTACGACCATCTTCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGG 3315554
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || ||||| || ||||| |||| | |||| | || |||||| || ||
Sbjct 3315555 TGGGATTCCCTCCTTATCTTGGATCTT-GGCTTTGACGTTCTCAATAGTGTCGCTGGGTT 3315613
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||| || || ||||| || ||||||||||| || ||||| |||||
Sbjct 3315614 CCACCTCCAAGGTGATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665
Score = 136 bits (150), Expect = 3e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || ||||| | | |||||||| || ||| |||||| ||||||||||| ||
Sbjct 3318413 CATACCTCCCCTCAGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 3318472
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| || ||| |||| ||||||||||| || || ||||||| ||||||||| || |
Sbjct 3318473 GGACAGGGTGCGTCCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGG 3318532
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
|| | || ||||| || ||||| |||| | |||| | ||||||||| | |
Sbjct 3318533 TGGGATTCCCTCCTTATCTTGGATCTT-GGCTTTGACGTTCTCGATGGTGTCGCTTGGCT 3318591
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
||||||||| || || ||||| || || || |||||||| ||||| |||||
Sbjct 3318592 CCACCTCCAAGGTGATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCAT 3318643
Score = 132 bits (146), Expect = 3e-26
Identities = 170/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166
||| || || ||||| | | || || || || ||| |||||| ||||||||||| ||
Sbjct 3315663 CATACCTCCCCTCAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 3315722
Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226
|| || ||| | || ||||||||||| || || ||||||||||||||||| || |
Sbjct 3315723 GGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGG 3315782
Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285
||| | |||||||| ||| ||||| |||| | |||| | |||||||| | |
Sbjct 3315783 AGGAATGCCTTCCTTATCCTGGATCTT-GGCTTTGACGTTCTCAATGGTGTCACTTGGCT 3315841
Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|||| || | || || ||||| || || || |||||||||||||| |||||
Sbjct 3315842 CCACTTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || || || ||| |||||| ||||||||||| |||| || ||| | || |||
Sbjct 3315229 ACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCC 3315288
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| || |||||||||| ||||||||| || | || | || ||||| |||
Sbjct 3315289 AGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCCTTATCCTGG 3315348
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
|| || ||||| || | |||||||| | ||||| || | || || |||||
Sbjct 3315349 ATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCACTTCGAGAGTGATGGTCTTA 3315408
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || |||||||||||||| |||||
Sbjct 3315409 CCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437
>seq183
Length=784777
Score = 131 bits (144), Expect = 1e-25
Identities = 157/211 (74%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| || || || ||| || || ||||||||||| |||| || |||| | || |||
Sbjct 331876 ACAAGATGCAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCC 331935
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
||||| || |||||||||||||| | ||||||||||| || | ||||| || |||
Sbjct 331936 AGCTGTTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCCTGG 331995
Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| |||| | |||| | ||||||||| | || ||||| | || || |||||
Sbjct 331996 ATCTTGGCCTTC-ACGTTCTCAATGGTGTCGCTTGGCTCAACCTCGAGGGTGATGGTCTT 332054
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| || ||||||||||||||||| ||||||
Sbjct 332055 GCCAGTCAGGGTCTTCACGAAGATCTGCATG 332085
Score = 122 bits (134), Expect = 6e-23
Identities = 169/234 (72%), Gaps = 6/234 (3%)
Strand=Plus/Plus
Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169
||| || || || | || ||||||||| || ||| |||||| ||||||||||| || |
Sbjct 331625 TCCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 331684
Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGAT----CAAACGCTGCTGATCTG 44225
|| |||| | || |||||||| || ||||||||||| ||| | |||||||||||
Sbjct 331685 CAGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTG 331744
Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284
|| | || || || || ||||| |||| | ||| | ||||||||| |
Sbjct 331745 GGGGAATGCCCTCTTTGTCTTGGATCTT-GGCTTTGACATTCTCAATGGTGTCGCTTGGC 331803
Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338
|| ||||| | || || ||||| || || |||||||| |||||||| ||||||
Sbjct 331804 TCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCATG 331857
Score = 105 bits (116), Expect = 5e-18
Identities = 153/211 (73%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTC 44187
|| || || || ||| ||| || ||||| ||||| |||| | || || || | || ||
Sbjct 332104 ACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTG-CGTCCATCTTC 332162
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
||||||||| || || |||||||| | |||||| |||| || | ||||| || |||
Sbjct 332163 CAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 332222
Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
||||| |||| | ||| | || ||||| | || ||||| | || || ||||
Sbjct 332223 GATCTT-GGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCT 332281
Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
| || |||||||||||||| |||||||||||
Sbjct 332282 TGCCAGTGAGGGTCTTCACAAAGATTTGCAT 332312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359943301443495
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |