Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq10511 149 9e-31
seq10513 145 1e-29
>seq10511
Length=4527151
Score = 149 bits (164), Expect = 9e-31
Identities = 177/240 (74%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 8345 GCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCC 8404
||||| || || || |||||||||| || ||||| ||||||||| |||||||| |
Sbjct 1118255 GCGCTGTTCACTATATCGAACCCCACCGTGCCACCGAACGTGCTGGGCATCCAGTACTCA 1118314
Query 8405 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGA 8464
|||||||||||| ||| ||| |||||||| |||||||| ||||| |||| ||| |
Sbjct 1118315 GGGGAGCAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAAGGGAGCTCCCATCTCCACC 1118374
Query 8465 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGC 8524
||| |||| ||||| | || ||| | |||||| ||||||| | || | |||||||
Sbjct 1118375 ATGGTCTCTCCGAACACAGCCCCGGGCCTGGGCTTCTCCACCAGCAGCCCAGAGTACAGC 1118434
Query 8525 TCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584
||||| ||| || ||||| || || | || || || || | |||||| ||||||
Sbjct 1118435 TCCACCAGCTCCACATCTCCATACAGCTTCTCCAGCTCCGCCGCCAGCTCCTTATCTCCT 1118494
Score = 123 bits (136), Expect = 4e-23
Identities = 161/223 (72%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
|| || || ||||||||||| | |||| || ||| || ||||| || | ||||
Sbjct 1120760 ATAAGCCGTGTGGTCTGGAAGATGCGCTCATCGTCCCAGTCGGGATGCTCCTCCTTCATG 1120819
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
| || || || | |||||||||||| |||||||| |||||||||||||| || |||||
Sbjct 1120820 ATGTCACAAACACGGTTGTGTTCCCTCAGCCAGATGGTGGCGTACATCATCAGGCCAGGG 1120879
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
||||| || || ||||| ||||| ||||| | || || || || | |||||
Sbjct 1120880 ACCAGACCGAAGGCCTCGTGACCCACAGCGAATCGGTGCACCTCAGGGACGTGAGGAGGG 1120939
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACA 9466
|| ||| | |||||| |||||||| ||| || |||||||
Sbjct 1120940 TAATGCATCTCCACCTGAACGTCTTTAACCAGCGGTGGATACA 1120982
>seq10513
Length=4150252
Score = 145 bits (160), Expect = 1e-29
Identities = 199/278 (72%), Gaps = 0/278 (0%)
Strand=Plus/Minus
Query 8308 CCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCC 8367
|||||||||||| | ||||| || ||| | | || | || | || | || ||
Sbjct 2696738 CCCCTTGACGTTATTGCAGACCAGCTTCTGCAGTGAGGCAGTGTTTATAATATCAAATCC 2696679
Query 8368 CACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCAT 8427
|| | || ||||| |||||||||||||||||| | |||||||| ||| ||| ||||
Sbjct 2696678 AACTTTGCCACCGAATGTGCTGGGCTTCCAGTACTCAGGGGAGCAAATGGGGTTTCCCAT 2696619
Query 8428 GAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTT 8487
|||||||| || ||| | || || |||| ||| | ||| | || ||||||||||||||
Sbjct 2696618 AAGGCCTTTCAGAGAGTATGGGGCACCCATCTCCACCATGGTTTCCCCGAAGATGGCGTT 2696559
Query 8488 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547
| | || || ||||| | | |||||||| |||||||| || || || ||||| ||
Sbjct 2696558 CTGTCTAGGTTTCTCCACTAGCAGACCGGTGTATAGCTCCACGGCGTCCACCTCTCCATA 2696499
Query 8548 AAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| || || || || || |||||||| || ||||
Sbjct 2696498 CAGCTCCTCCAGCTCTGCCGCCATCTCCTTCTCACCTG 2696461
Score = 125 bits (138), Expect = 1e-23
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||| ||| |||| ||| ||| || ||||| || ||||| |||| ||||| ||
Sbjct 2694174 GTCTGGAAGAGTCGCTCATCATCCCAGTCCGGATGCTCCTGTTTAAGAATGTCGCAGACG 2694115
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
| ||||||||||| ||||| || || || ||||||||||| || || |||| ||| ||
Sbjct 2694114 CGGTTGTGTTCCCGAAGCCAAATTGTCGCATACATCATGAGGCCTGGGACCAAGCCGAAG 2694055
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|| || || || ||||| | || || ||||| | ||||||||| ||||| |
Sbjct 2694054 GCTTCATGGCCCACAGCAAAGCGGTGAGACTCAGGCACGTGAGGAGGATAGTGCATGTCC 2693995
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
||||| || || |||| | || || || | ||||| || | ||||
Sbjct 2693994 ACCTGAACATCACTGACAGTAGGTGGGTATACCTCACCATCCAGAATCT 2693946
Score = 89.7 bits (98), Expect = 7e-13
Identities = 118/164 (72%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||| ||| || | || ||||| ||||| |||||||| || |||| ||| || |
Sbjct 2692600 TCACCTGCGACACCCATCGGCGTTGGGCAATCCTGAGGAACAGGGGGTAAGGTCCGTGTG 2692541
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
| ||||| || ||||| | || |||||||| ||| | ||||| | ||| || |
Sbjct 2692540 AAGTAGGACAGGTTGGAATAGGCCTCCCAGCTCTTGTAGCCATAGTCGGAATTGAATGTT 2692481
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGAGCCAGCAAAAAA 10071
|||||||||||||||| || ||| | |||| ||| ||| ||
Sbjct 2692480 GGAGGGCTGTCAATCAGATGGGAACGTGCTGATTCAGGAAAGAA 2692437
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716780604094400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |