Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq10511 149 9e-31 seq10513 145 1e-29 >seq10511 Length=4527151 Score = 149 bits (164), Expect = 9e-31 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8345 GCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCC 8404 ||||| || || || |||||||||| || ||||| ||||||||| |||||||| | Sbjct 1118255 GCGCTGTTCACTATATCGAACCCCACCGTGCCACCGAACGTGCTGGGCATCCAGTACTCA 1118314 Query 8405 GGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGA 8464 |||||||||||| ||| ||| |||||||| |||||||| ||||| |||| ||| | Sbjct 1118315 GGGGAGCAGATGGGGTTTCCCAGCAGGCCTTTCAGGGAGAAGGGAGCTCCCATCTCCACC 1118374 Query 8465 ATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGC 8524 ||| |||| ||||| | || ||| | |||||| ||||||| | || | ||||||| Sbjct 1118375 ATGGTCTCTCCGAACACAGCCCCGGGCCTGGGCTTCTCCACCAGCAGCCCAGAGTACAGC 1118434 Query 8525 TCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 ||||| ||| || ||||| || || | || || || || | |||||| |||||| Sbjct 1118435 TCCACCAGCTCCACATCTCCATACAGCTTCTCCAGCTCCGCCGCCAGCTCCTTATCTCCT 1118494 Score = 123 bits (136), Expect = 4e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 || || || ||||||||||| | |||| || ||| || ||||| || | |||| Sbjct 1120760 ATAAGCCGTGTGGTCTGGAAGATGCGCTCATCGTCCCAGTCGGGATGCTCCTCCTTCATG 1120819 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || | |||||||||||| |||||||| |||||||||||||| || ||||| Sbjct 1120820 ATGTCACAAACACGGTTGTGTTCCCTCAGCCAGATGGTGGCGTACATCATCAGGCCAGGG 1120879 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 ||||| || || ||||| ||||| ||||| | || || || || | ||||| Sbjct 1120880 ACCAGACCGAAGGCCTCGTGACCCACAGCGAATCGGTGCACCTCAGGGACGTGAGGAGGG 1120939 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACA 9466 || ||| | |||||| |||||||| ||| || ||||||| Sbjct 1120940 TAATGCATCTCCACCTGAACGTCTTTAACCAGCGGTGGATACA 1120982 >seq10513 Length=4150252 Score = 145 bits (160), Expect = 1e-29 Identities = 199/278 (72%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 8308 CCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCC 8367 |||||||||||| | ||||| || ||| | | || | || | || | || || Sbjct 2696738 CCCCTTGACGTTATTGCAGACCAGCTTCTGCAGTGAGGCAGTGTTTATAATATCAAATCC 2696679 Query 8368 CACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCAT 8427 || | || ||||| |||||||||||||||||| | |||||||| ||| ||| |||| Sbjct 2696678 AACTTTGCCACCGAATGTGCTGGGCTTCCAGTACTCAGGGGAGCAAATGGGGTTTCCCAT 2696619 Query 8428 GAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTT 8487 |||||||| || ||| | || || |||| ||| | ||| | || |||||||||||||| Sbjct 2696618 AAGGCCTTTCAGAGAGTATGGGGCACCCATCTCCACCATGGTTTCCCCGAAGATGGCGTT 2696559 Query 8488 GGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 | | || || ||||| | | |||||||| |||||||| || || || ||||| || Sbjct 2696558 CTGTCTAGGTTTCTCCACTAGCAGACCGGTGTATAGCTCCACGGCGTCCACCTCTCCATA 2696499 Query 8548 AAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || || || |||||||| || |||| Sbjct 2696498 CAGCTCCTCCAGCTCTGCCGCCATCTCCTTCTCACCTG 2696461 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||| ||| |||| ||| ||| || ||||| || ||||| |||| ||||| || Sbjct 2694174 GTCTGGAAGAGTCGCTCATCATCCCAGTCCGGATGCTCCTGTTTAAGAATGTCGCAGACG 2694115 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 | ||||||||||| ||||| || || || ||||||||||| || || |||| ||| || Sbjct 2694114 CGGTTGTGTTCCCGAAGCCAAATTGTCGCATACATCATGAGGCCTGGGACCAAGCCGAAG 2694055 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 || || || || ||||| | || || ||||| | ||||||||| ||||| | Sbjct 2694054 GCTTCATGGCCCACAGCAAAGCGGTGAGACTCAGGCACGTGAGGAGGATAGTGCATGTCC 2693995 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 ||||| || || |||| | || || || | ||||| || | |||| Sbjct 2693994 ACCTGAACATCACTGACAGTAGGTGGGTATACCTCACCATCCAGAATCT 2693946 Score = 89.7 bits (98), Expect = 7e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | || ||||| ||||| |||||||| || |||| ||| || | Sbjct 2692600 TCACCTGCGACACCCATCGGCGTTGGGCAATCCTGAGGAACAGGGGGTAAGGTCCGTGTG 2692541 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 | ||||| || ||||| | || |||||||| ||| | ||||| | ||| || | Sbjct 2692540 AAGTAGGACAGGTTGGAATAGGCCTCCCAGCTCTTGTAGCCATAGTCGGAATTGAATGTT 2692481 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGAGCCAGCAAAAAA 10071 |||||||||||||||| || ||| | |||| ||| ||| || Sbjct 2692480 GGAGGGCTGTCAATCAGATGGGAACGTGCTGATTCAGGAAAGAA 2692437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716780604094400