Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq183 158 3e-33
seq10555 145 2e-29
>seq183
Length=784777
Score = 158 bits (174), Expect = 3e-33
Identities = 161/209 (77%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980
|| || |||||||| || || || || || || |||||||||||||| || ||||
Sbjct 332081 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC--- 332025
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
|||||||| |||||||| || ||||| |||||||||||||| || || || || |||
Sbjct 332024 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 331965
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| | | ||||| ||||| |||||||| |||||||| | || || |||| || |||
Sbjct 331964 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 331905
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| |||||||| || |||||||||||
Sbjct 331904 ATCCAGAAAGAATCCACCCTGCATCTTGT 331876
Score = 143 bits (158), Expect = 6e-29
Identities = 160/209 (77%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
||||| || ||||| || ||||| || || || |||||||| ||||| || || ||
Sbjct 332309 CAAATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGA--GCCAAGTG 332252
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
|||| || ||||| |||||| ||||| |||||||||||||| || || || |||||||
Sbjct 332251 ACACAATTGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAGC 332192
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100
| | | |||||||| || || ||||| ||||||||| | || |||| |||| || ||
Sbjct 332191 AGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCAC-CTTGTCCGACTACAAT 332133
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| ||||| || || || ||||||||
Sbjct 332132 ATCCAGAAAGAGTCCACTCTCCATCTTGT 332104
>seq10555
Length=3328687
Score = 145 bits (160), Expect = 2e-29
Identities = 158/208 (76%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981
|| || |||||||| || || || || || || ||||| ||||| ||||| || ||
Sbjct 3315890 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAAGTGGA--GCCAAGTG 3315833
Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||| |||||||||||| ||||| ||||| || ||||| || ||||| |||||||
Sbjct 3315832 ACACCATTGAGAACGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAGC 3315773
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101
| || | |||||||| || || ||||| ||||||||| | || || |||| || |||
Sbjct 3315772 AGCGTTTGATCTTCGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACA 3315713
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || || ||||| ||
Sbjct 3315712 TCCAGAAGGAGTCCACCCTCCATCTCGT 3315685
Score = 140 bits (154), Expect = 8e-28
Identities = 157/209 (75%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980
|| || || ||||| || || || || || || |||||| | |||||||| ||||
Sbjct 3318640 CAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCTTGGAGGTGGAGCCAAGC--- 3318584
Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040
||||||||||||||||||||| ||||| || || || || |||||||| || ||||||
Sbjct 3318583 GACACCATCGAGAACGTCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCCGACCAG 3318524
Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100
|| || || |||||||| || || ||||| ||||| ||| | || || |||| || |||
Sbjct 3318523 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTACAAC 3318464
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129
|||| || || || || || || || ||
Sbjct 3318463 ATCCAGAAGGAGTCCACCCTCCACCTGGT 3318435
Score = 132 bits (146), Expect = 1e-25
Identities = 153/206 (74%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || || || ||||| || || || |||||| | ||||||||| | |||
Sbjct 3315662 CAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCTTGGAGGTGGAACCCAGCGAC 3315603
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || |||||||||||| ||||| || || || || |||||||| || ||||||||
Sbjct 3315602 ACTATTGAGAACGTCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCTGACCAGCAG 3315543
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| ||||| || ||||| |||||||| | ||||| |||| || ||| ||
Sbjct 3315542 CGTCTGATCTTTGCCGGTAAGCAGCTTGAAGATGGTCGTACTCTCTCCGACTACAACATC 3315483
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || |||||
Sbjct 3315482 CAGAAGGAGAGTACCCTCCACCTTGT 3315457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203565636177590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |