Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq183 158 3e-33 seq10555 145 2e-29 >seq183 Length=784777 Score = 158 bits (174), Expect = 3e-33 Identities = 161/209 (77%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || |||||||| || || || || || || |||||||||||||| || |||| Sbjct 332081 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCAAGC--- 332025 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||| |||||||| || ||||| |||||||||||||| || || || || ||| Sbjct 332024 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAG 331965 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | | ||||| ||||| |||||||| |||||||| | || || |||| || ||| Sbjct 331964 CAGAGGTTGATCTTTGCCGGCAAACAGCTGGAAGATGGGCGCACCCTGTCCGACTACAAC 331905 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || ||||||||||| Sbjct 331904 ATCCAGAAAGAATCCACCCTGCATCTTGT 331876 Score = 143 bits (158), Expect = 6e-29 Identities = 160/209 (77%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| || ||||| || ||||| || || || |||||||| ||||| || || || Sbjct 332309 CAAATCTTTGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGA--GCCAAGTG 332252 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || ||||| |||||| ||||| |||||||||||||| || || || ||||||| Sbjct 332251 ACACAATTGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGACCAGC 332192 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 | | | |||||||| || || ||||| ||||||||| | || |||| |||| || || Sbjct 332191 AGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCAC-CTTGTCCGACTACAAT 332133 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || || |||||||| Sbjct 332132 ATCCAGAAAGAGTCCACTCTCCATCTTGT 332104 >seq10555 Length=3328687 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||| ||||| ||||| || || Sbjct 3315890 CAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAAGTGGA--GCCAAGTG 3315833 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| |||||||||||| ||||| ||||| || ||||| || ||||| ||||||| Sbjct 3315832 ACACCATTGAGAACGTCAAAGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAGC 3315773 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || | |||||||| || || ||||| ||||||||| | || || |||| || ||| Sbjct 3315772 AGCGTTTGATCTTCGCTGGTAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAACA 3315713 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || ||||| || Sbjct 3315712 TCCAGAAGGAGTCCACCCTCCATCTCGT 3315685 Score = 140 bits (154), Expect = 8e-28 Identities = 157/209 (75%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || || || ||||| || || || || || || |||||| | |||||||| |||| Sbjct 3318640 CAGATCTTTGTGAAGACGCTGACTGGTAAGACCATCACCTTGGAGGTGGAGCCAAGC--- 3318584 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||||||||||||||||||| ||||| || || || || |||||||| || |||||| Sbjct 3318583 GACACCATCGAGAACGTCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCCGACCAG 3318524 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||| || || ||||| ||||| ||| | || || |||| || ||| Sbjct 3318523 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTACAAC 3318464 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 3318463 ATCCAGAAGGAGTCCACCCTCCACCTGGT 3318435 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || ||||| || || || |||||| | ||||||||| | ||| Sbjct 3315662 CAGATCTTTGTCAAGACCCTCACTGGTAAGACCATCACCTTGGAGGTGGAACCCAGCGAC 3315603 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||||||| ||||| || || || || |||||||| || |||||||| Sbjct 3315602 ACTATTGAGAACGTCAAAGCCAAGATCCAAGATAAGGAGGGAATCCCACCTGACCAGCAG 3315543 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || ||||| |||||||| | ||||| |||| || ||| || Sbjct 3315542 CGTCTGATCTTTGCCGGTAAGCAGCTTGAAGATGGTCGTACTCTCTCCGACTACAACATC 3315483 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| Sbjct 3315482 CAGAAGGAGAGTACCCTCCACCTTGT 3315457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203565636177590