Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23]
10,735 sequences; 1,191,242,572 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq10555 145 7e-30
seq183 123 2e-23
>seq10555
Length=3328687
Score = 145 bits (160), Expect = 7e-30
Identities = 167/222 (75%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | ||||| || || ||| ||||||||| ||||| |||||||| ||||||||
Sbjct 3318426 AGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 3318485
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
|||| || |||||||| || ||||| ||||| ||||| ||||| | || | | ||||
Sbjct 3318486 CCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCC 3318545
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|| || ||| || |||| ||| | | |||||||| | ||||||||||| ||
Sbjct 3318546 TTATCTTGGATCTTG-GCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGT 3318604
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|| || ||||| ||||||||||| || || |||||||| ||
Sbjct 3318605 GATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTT 3318646
Score = 141 bits (156), Expect = 9e-29
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
|||||| || ||||| | || ||||| || ||| ||||||||| ||||| ||||||||
Sbjct 3315210 GCCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3315269
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|||||||| | || || |||||||| || || || ||||| ||||| ||||| | ||
Sbjct 3315270 CAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGG 3315329
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
| | |||||| ||| |||||| ||||| | ||||| || | ||||||
Sbjct 3315330 GATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCAC 3315389
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| | || || || ||||| ||||||||||| ||||| ||||||||
Sbjct 3315390 TTCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437
Score = 131 bits (144), Expect = 2e-25
Identities = 162/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || ||| ||||||||| ||||| |||||||| ||||||||
Sbjct 3315676 AGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 3315735
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||| || ||||| |||| ||||| ||||| | |||| || |||
Sbjct 3315736 CCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCC 3315795
Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823
|| ||| ||| || |||| ||| || | |||| || | |||||| || | ||
Sbjct 3315796 TTATCCTGGATCTTG-GCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGT 3315854
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || ||||||||||| ||||| ||||||||
Sbjct 3315855 GATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893
Score = 127 bits (140), Expect = 2e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || || || || || ||||||||||| ||||| ||||||||||| || ||
Sbjct 3315448 AGACGGAGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGA 3315507
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || |||||||| ||||| || ||||| ||||| ||||| | || | | ||||
Sbjct 3315508 CCATCTTCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCC 3315567
Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|| | | || | || |||| ||| | | ||||||||| | |||||||||| ||
Sbjct 3315568 TTAT-CTTGGATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGT 3315626
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || ||||| || || ||||| || || ||||||||
Sbjct 3315627 GATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665
>seq183
Length=784777
Score = 123 bits (136), Expect = 2e-23
Identities = 169/233 (73%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| | ||||| | |||||| || || ||| ||||||||| ||||| ||||| ||
Sbjct 331626 CCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 331685
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCG----CTGTTGGTCCGC 41751
||||||||| | || || ||||| |||||||| || |||| | ||| || || |
Sbjct 331686 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGG 331745
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACT 41810
||||| || ||| ||||| ||| || |||| || || | ||||||| | ||
Sbjct 331746 GGGAATGCCCTCTTTGTCTTGGATCTTG-GCTTTGACATTCTCAATGGTGTCGCTTGGCT 331804
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
| ||||| | || || || || || ||||| ||||||||||| |||||||||
Sbjct 331805 CAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCATG 331857
Score = 100 bits (110), Expect = 3e-16
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704
||||| | || ||||| || ||| ||| ||||| || || |||||||| | ||||||
Sbjct 332095 AGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGT 332154
Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764
| || || ||||||||||| ||||| |||| | ||| ||||| | ||||| || ||
Sbjct 332155 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCT 332214
Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823
|||||| || | || |||| || | | ||||| || | ||| ||||| | ||
Sbjct 332215 TTGTCC-TGGATCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGT 332273
Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || || || || || ||||| || || || |||||
Sbjct 332274 GATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCAT 332312
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462241964582000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |