Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Astyanax_20mexicanus_20[refseq_20GCF_5F000372685.1_202013-04-23] 10,735 sequences; 1,191,242,572 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq10555 145 7e-30 seq183 123 2e-23 >seq10555 Length=3328687 Score = 145 bits (160), Expect = 7e-30 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| ||||||||| ||||| |||||||| |||||||| Sbjct 3318426 AGACGAAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 3318485 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| || ||||| ||||| ||||| ||||| | || | | |||| Sbjct 3318486 CCGTCTTCCAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCGGGTGGGATTCCCTCC 3318545 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || || ||| || |||| ||| | | |||||||| | ||||||||||| || Sbjct 3318546 TTATCTTGGATCTTG-GCTTTGACGTTCTCGATGGTGTCGCTTGGCTCCACCTCCAAGGT 3318604 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || ||||| ||||||||||| || || |||||||| || Sbjct 3318605 GATGGTCTTACCAGTCAGCGTCTTCACAAAGATCTGCATCTT 3318646 Score = 141 bits (156), Expect = 9e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| || ||||| | || ||||| || ||| ||||||||| ||||| |||||||| Sbjct 3315210 GCCGCCACGGAGACGCAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 3315269 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| | || || |||||||| || || || ||||| ||||| ||||| | || Sbjct 3315270 CAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGACGCTGCTGGTCGGGTGG 3315329 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| |||||| ||||| | ||||| || | |||||| Sbjct 3315330 GATTCCCTCCTTATCCTGGATTTTAGCCTTCACATTTTCAATGGTGTCACTTGGCTCCAC 3315389 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || | || || || ||||| ||||||||||| ||||| |||||||| Sbjct 3315390 TTCGAGAGTGATGGTCTTACCAGTCAGCGTCTTCACGAAGATCTGCAT 3315437 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||||||||| ||||| |||||||| |||||||| Sbjct 3315676 AGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 3315735 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || ||||| |||| ||||| ||||| | |||| || ||| Sbjct 3315736 CCATCTTCCAGCTGCTTACCAGCGAAGATCAAACGCTGCTGGTCGGGAGGAATGCCTTCC 3315795 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| || |||| ||| || | |||| || | |||||| || | || Sbjct 3315796 TTATCCTGGATCTTG-GCTTTGACGTTCTCAATGGTGTCACTTGGCTCCACTTCGAGAGT 3315854 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||||||||| ||||| |||||||| Sbjct 3315855 GATGGTCTTGCCAGTCAGCGTCTTCACGAAGATCTGCAT 3315893 Score = 127 bits (140), Expect = 2e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || || || || ||||||||||| ||||| ||||||||||| || || Sbjct 3315448 AGACGGAGGACAAGGTGGAGGGTACTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTACGA 3315507 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| ||||| || ||||| ||||| ||||| | || | | |||| Sbjct 3315508 CCATCTTCAAGCTGCTTACCGGCAAAGATCAGACGCTGCTGGTCAGGTGGGATTCCCTCC 3315567 Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || | | || | || |||| ||| | | ||||||||| | |||||||||| || Sbjct 3315568 TTAT-CTTGGATCTTGGCTTTGACGTTCTCAATAGTGTCGCTGGGTTCCACCTCCAAGGT 3315626 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| || || ||||| || || |||||||| Sbjct 3315627 GATGGTCTTACCAGTGAGGGTCTTGACAAAGATCTGCAT 3315665 >seq183 Length=784777 Score = 123 bits (136), Expect = 2e-23 Identities = 169/233 (73%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | |||||| || || ||| ||||||||| ||||| ||||| || Sbjct 331626 CCGCCCCTGAGACGCAGCACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 331685 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCG----CTGTTGGTCCGC 41751 ||||||||| | || || ||||| |||||||| || |||| | ||| || || | Sbjct 331686 AGGGTGCGCCCATCTTCCAGCTGTTTGCCGGCAAAGATCAACCAACCTCTGCTGATCTGG 331745 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACT 41810 ||||| || ||| ||||| ||| || |||| || || | ||||||| | || Sbjct 331746 GGGAATGCCCTCTTTGTCTTGGATCTTG-GCTTTGACATTCTCAATGGTGTCGCTTGGCT 331804 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | ||||| | || || || || || ||||| ||||||||||| ||||||||| Sbjct 331805 CAACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTTACGAAGATCTGCATG 331857 Score = 100 bits (110), Expect = 3e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||| ||||| || || |||||||| | |||||| Sbjct 332095 AGACGAAGGACAAGATGGAGAGTGGACTCTTTCTGGATATTGTAGTCGGACAAGGTGCGT 332154 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| |||| | ||| ||||| | ||||| || || Sbjct 332155 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCT 332214 Query 41765 TTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || |||| || | | ||||| || | ||| ||||| | || Sbjct 332215 TTGTCC-TGGATCTTGGCTTTGACATTCTCAATTGTGTCACTTGGCTCAACCTCAAGGGT 332273 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| || || || ||||| Sbjct 332274 GATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCAT 332312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462241964582000