Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2653 93.3 4e-14 seq558 93.3 4e-14 seq114 86.0 6e-12 >seq2653 Length=13515 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| || ||||| || |||| ||||||||| ||||| |||| Sbjct 11618 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCGCTTCT 11559 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | ||||| || || | ||||||||| || || ||||| || ||||| || | || |||| Sbjct 11558 TCAACCAGAAGATGGAGGCGAACGAACCGGAGAAGAAGATCCCCTCCACAGCAGCGAACG 11499 Query 17106 C 17106 | Sbjct 11498 C 11498 >seq558 Length=349536 Score = 93.3 bits (102), Expect = 4e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||||||||||||||| || ||||| || |||| ||||||||| ||||| |||| Sbjct 123754 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCGCTTCT 123813 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | ||||| || || | ||||||||| || || ||||| || ||||| || | || |||| Sbjct 123814 TCAACCAGAAGATGGAGGCGAACGAACCGGAGAAGAAGATCCCCTCCACAGCAGCGAACG 123873 Query 17106 C 17106 | Sbjct 123874 C 123874 >seq114 Length=1837260 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 58034 GTGATCGGGATAGACGAGGGACAGTTTTTCCCCAACATCGTATCGTTTTGCGAACGTATG 58093 |||||||| || ||||| | |||||||| ||| || | ||||||||||| || | ||| Sbjct 629697 GTGATCGGTATCGACGAAGCGCAGTTTTTTCCCGACGTGGTATCGTTTTGTGAGAGAATG 629638 Query 58094 GCGAATGCCGGAAAGGTGTTGATCGTGGCCGCGTTGGACGGAACGTTTCAACGTAAACCG 58153 || || || || || |||| || |||||||||||||| ||||| || | | || Sbjct 629637 GCCAACGCGGGTAAAACCGTGATTGTCGCCGCGTTGGACGGGACGTTCGAAAGGAGGCCC 629578 Query 58154 TTTACCAACATTTGTGAACTGATACCGTTGGCCGAAAACGTAACAAAACTGAACGCGGTA 58213 ||| | | | | | || | ||| |||||||| | ||| ||| | |||||||| Sbjct 629577 TTTGGAAGCGTCTTGGGTCTCGTGCCGCTGGCCGAAGATGTAGTGAAATTACACGCGGTA 629518 Query 58214 TG 58215 || Sbjct 629517 TG 629516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517352911303800