Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq345 493 2e-134 >seq345 Length=614307 Score = 493 bits (546), Expect = 2e-134 Identities = 1278/1941 (66%), Gaps = 15/1941 (1%) Strand=Plus/Minus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 ||||| ||||| || ||||| | ||||| || | || | || ||||| || || Sbjct 404496 TTCTTCATCTCCTCGTTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 404437 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | || || ||||| || | || || || ||||| || || ||||| |||| || Sbjct 404436 ACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 404377 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 404376 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATCGGCGCCAGCAGC 404317 Query 53267 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGA 53326 | || ||||| | |||| | ||| || || || || | | ||| | ||| || Sbjct 404316 AGGCTGTTTCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 404257 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGATC 53384 || | ||| | | | || || || || | ||| || ||| | Sbjct 404256 TCAGTCGG--CGTCTTGTCCCACATGTCGTACTGCAGGATGCCCCTGCTGACGGGCGAGC 404199 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 || | || || ||||| || || || | || || || || || ||||| | || Sbjct 404198 CTTCGTACGTCTCGTAGGGGCCCAGTTTGGCCGCGAGCTCGCAGCTGGCCTCCAGAGCGG 404139 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 |||| || ||||| || || |||| | || || || || ||| | || ||||| | Sbjct 404138 CGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGAGCCTCCGGACTTTCAAAGG 404079 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 | ||| | | || || ||||||||||| || || || || || ||||| || || | Sbjct 404078 GGTAACGCATCAAGATGAAGGCGTCTGCTAAACCCTGGACTCCGATTCCGATCGGCCTGT 404019 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | || || || || || || || || | || || || || || || || || || | Sbjct 404018 GGCGTTTGTTGGACATCTCGGCCTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTGT 403959 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATTGTCC- 53682 | | |||| |||| || |||||| |||| |||||| ||| ||| || || | Sbjct 403958 TCAAGTTTTTGACTATCACTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGTGCGCT 403899 Query 53683 -ATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAG 53741 | | || ||||||| | || || ||||||||||| ||||| || ||||| | | Sbjct 403898 CAGGCGTGACGTACATGTTGAGAGCGATGGATGCCAGATTGCAAACTGCCACCTCGTCGG 403839 Query 53742 CATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTT 53801 | | |||| | | ||| ||||| | || || ||||||||||| || | ||| | Sbjct 403838 CGCTGGTGTATTCCACGACCTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAGATTCT 403779 Query 53802 GTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAA 53861 | || || ||||| |||| ||||| || || || | ||| | ||||| || || || Sbjct 403778 GCTGGTTGCTCTTCCTGTTGCACGCGTCTTTGTACAACATGTACGGCGTTCCGGTCTCCG 403719 Query 53862 TCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCT 53921 ||||||| ||||| || || | ||| | |||| || | | | || ||| Sbjct 403718 TCTGGGACTCTATGATGGCGTACCAAAGCTGCTGAGCTTTCACCACACGCTTCACCCTCC 403659 Query 53922 TTTCTCTTTCGTAT--AGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAA 53979 ||| | |||||| |||||| | || |||||||| || ||||| | ||| | Sbjct 403658 CTTCCTTCTCGTATGTAGTGTACAGCTTC--TCAAACTCCTCCCCCCAGCACTCGTCGAG 403601 Query 53980 TCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCAT 54039 || ||||| || | |||||||||| ||||| || || || |||||| ||||| Sbjct 403600 CCCCGGACACTCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACTCGCTTCAT 403541 Query 54040 AAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTC 54098 || || || || ||||| || || ||| || || ||||||| ||| || ||||| || | Sbjct 403540 GAACAGGTCGGGGATCCACAGGGC-ATAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTGC 403482 Query 54099 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 54158 | || ||||| || || || ||||| | | | ||| ||||||| || |||||||| | Sbjct 403481 CAGTGTTCTTCTTCAGCTCTAGGAAGTCAAACACGTCAAAATGCCAAGGCTCCAAGTACA 403422 Query 54159 TGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 54218 ||| | | || || | |||||| || || ||||| | ||| | ||||||||| || | Sbjct 403421 TGGCGAAGGCCCCGGGTCTTTTGTTGCCACCTTGATCGACGTAGCGAGCGGTGTTGTTGT 403362 Query 54219 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 54278 ||||||||| ||| |||| | || ||||| || ||||| |||| ||| ||||| | Sbjct 403361 AAACTCTCAGCATGGGAACCAGCCCGTTGGAGTTCCCGTTGGTACCGGCGATGTAGCTCC 403302 Query 54279 CACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 || ||| | || || | | || || || || || || || || || | | Sbjct 403301 CAGTGGATCTGATGCAGCTGACCGCTACGCCAATGCCTCCGGCAGACTTGGAAATGAGGG 403242 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 |||| | || | || || |||||||| || || || || || ||||| || | | Sbjct 403241 CGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGA 403182 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 | ||||| |||| || | ||| | ||||| || || || | || ||||| ||||| | Sbjct 403181 AGCAGCTGGACAGCTGCGGCCGATTGGTTCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAG 403122 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGAT 54518 | ||||| || || || || ||||||||||||||||| || | || || || | Sbjct 403121 TGAACCACTTCTCTGACAGCAGATTGTACGTCTCGATGGCCGCTTCGATGTCGGTCCCGT 403062 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 | || || || | || | ||| | ||||||||| || | || | | |||| ||| | Sbjct 403061 GGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGA 403002 Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 ||||||||| ||||| |||| ||| || || || || ||||||| || || |||| Sbjct 403001 TTTTCAGCAGATAGGAGCGCTCCAGAGTCTTGAATCCGAAGAAGTTGTAGGAGAAATCTC 402942 Query 54639 GTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAA 54698 || ||||| || | |||||||| || || | | ||| | | || || Sbjct 402941 TGTCATAAATGATGGCGGAGTTGAGGCGGTCTTTGTTCTCCAGAACGATGTGCAGCGTGT 402882 Query 54699 TACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCT 54758 | || || || || || || || ||| |||| ||||| | | |||| Sbjct 402881 CTTTGGAGATCATGGGGGAGTGGCGTTGGTTCAAAGGGTTGATGTAGTTGTACAGGTCCT 402822 Query 54759 TCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAG 54818 |||||| || || || | || || || |||||||| || ||||| || || || || | Sbjct 402821 CCATCACGTCGCTGAACACCTTCTTGGTCTCTTTGTGCAGGTTTGAGACAGCGATCCTCG 402762 Query 54819 CGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCA 54878 | || || |||||||| || || |||| || || ||||| || || || |||| | Sbjct 402761 CAGCGAGGATGGCATAGTCGGGGTGTTTGGTCGTCAGCGTGGCAGCAATCTCAGCTGCTA 402702 Query 54879 GAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTA 54938 | ||||| | || || || || || || |||| | |||||||| |||||||| | | Sbjct 402701 GCGTGTCGAGCTCCACGGTGGTGACGCCGCTATACAGACCTTGGATCACCTTCATGGTGA 402642 Query 54939 TTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCT-AATACGAGAT 54997 | | | || || | | |||| ||| | |||||| || || |||| |||||||| Sbjct 402641 TCTGAGCCGGGTCCACAAACTCAGAGTTCAGGCCATAGCA-AAGCTTCTGGATACGAGAG 402583 Query 54998 GTGATTTTATCAAACATGACA 55018 ||||||||||| ||||||||| Sbjct 402582 GTGATTTTATCGAACATGACA 402562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593500550026800