Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq101 176 5e-39 >seq101 Length=1578606 Score = 176 bits (194), Expect = 5e-39 Identities = 145/177 (82%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 145746 CTCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAA 145805 |||||| || | || ||| |||| ||||||||| || || | ||||||||| |||||||| Sbjct 214021 CTCGAGTCCTGCGATGTGTGCGATCATGTAGGTGAGAAGAGCGTAGCTGGCGATGTTGAA 214080 Query 145806 GGGCACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCC 145865 ||||||||||| |||||||| ||||||||||||||||||| ||||| ||||| ||| | Sbjct 214081 AGGCACCCCCAGACCCATGTCGGCCGAGCGCTGGTACAGCTGACAGGACAGCTCGCCGTC 214140 Query 145866 CGCCACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTC 145922 ||||||||||| ||||| ||||||||| ||||| |||||| ||| ||||| Sbjct 214141 ACAGACGTAGAACTGACACAGAGCGTGGCAGGGGGGCAGAGCCATGAGGGGGAGGTC 214197 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 146198 CCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGACCCTCTTGGTGGTCA 146257 || |||||||||| ||||| ||||| |||| ||| ||||||| || ||||||||||||| Sbjct 216189 CCTTGATGAACCACAGCAGTTCTTCAAGGATCCCTTTCCAGAAAACTCTCTTGGTGGTCA 216248 Query 146258 GCAGGGGGAACTGG 146271 ||||||| |||||| Sbjct 216249 GCAGGGGAAACTGG 216262 Score = 84.2 bits (92), Expect = 3e-11 Identities = 113/157 (72%), Gaps = 8/157 (5%) Strand=Plus/Plus Query 146047 GCCCCGAAGTGCCTCCACTGGAACCCGTAGACGGGCCCCAGGTCCCCGGGCTCCCTGTGC 146106 || || ||||| |||||||| |||||||| || || || |||||||| ||| | | Sbjct 215441 GCACCAAAGTGTCTCCACTGAAACCCGTAAACAGGACCGAGGTCCCCCTCCTCTCGG--- 215497 Query 146107 CCCAGCCCGGCCCGGG----CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGAC 146162 || | |||| || | |||||| | |||||||||||||| ||||||||||| || Sbjct 215498 -CCTGTAAAGCCCAGGTTGTCCAGGAAGGCTCGGGACCCGTTGGCATCCCAGATCTTCAC 215556 Query 146163 GCCCCTCGCGGAGAGCTCATTGGAGTCCGTGGACCCC 146199 || || | || ||||| |||| || || || ||| Sbjct 215557 ACCTTTCTCTGACAGCTCCTTGGCGTTTGTTGATCCC 215593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589857107031400