Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq56 113 5e-20 >seq56 Length=2337707 Score = 113 bits (124), Expect = 5e-20 Identities = 192/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Minus Query 83120 GGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCAC 83179 || || || |||| || | | ||||||||| |||||||||| ||| ||||| | || | Sbjct 555638 GGTGTTCCATCAGGCCCAATGAGGAACTTCTCAAAGTTCCAGGACACRTCGTTCCTGCTC 555579 Query 83180 ACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGC 83239 || || |||| |||| || ||||||||||| || | | |||||| || || Sbjct 555578 ACCGGGCTCCAGATGATGAACTTGGGGTCGCTCATCAGGGACGTACGGTCGTCACTGGGG 555519 Query 83240 GCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC--CCTTGCACCGTTGACCT 83297 || || | || ||||| | || | || || || |||| ||| || || | Sbjct 555518 TGAGGAAGCTCATCCTTCAGGAACACAAACAAGGGGTGGGCGTCCTT--ACCATTCACGT 555461 Query 83298 CGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCA 83357 | |||||| | |||| ||| || ||||||||||| || ||||||||||||| ||||| Sbjct 555460 CCACCTTCTCAAGGAGCTGAAACTTGGGCTCGAAGCCATTTCCAGGACGGACGTACTTCA 555401 Query 83358 GGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | || | || ||| || |||||| | ||| ||||| Sbjct 555400 GAGAKGCCAGGATTTCTTCATTCTTGCAGTTCTCCTG 555364 Score = 86.0 bits (94), Expect = 8e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCC-TAGG 83449 |||| || ||||||||||| || || | || || | || |||||| || | || Sbjct 554968 CCTGATGGCCGAACTGGTTGCAGGGTACTCCCAGGATCACGAGCCCCTTCGCGGCGTACC 554909 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 | || || |||||||||||||| ||||| |||| ||| || |||||||||| ||||| Sbjct 554908 TGTCG-TGGAGCTCGTTCATCTGGGTGTAATCCCTGACGGTCGTACCTCAGAGAGACGCG 554850 Query 83510 ACGTTCTCGATGAG 83523 |||||||| ||||| Sbjct 554849 ACGTTCTCAATGAG 554836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608570137341400