Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq226 127 2e-24 seq68 109 5e-19 seq7633 91.5 1e-13 >seq226 Length=808630 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | |||||||||||| || ||||| ||||| | |||||| || | || Sbjct 361788 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 361729 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||| ||||| || | || || ||||||||||| || | |||||||||||| Sbjct 361728 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 361669 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | | | || |||| ||||||| |||| ||| |||||| Sbjct 361668 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 361609 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 ||||| || | || |||||||| || ||||| || Sbjct 361608 TTGCCAGTGAGGGTCTTGACAAAAATCTGCATGTT 361574 >seq68 Length=2311667 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| || || ||||| | ||||| ||||| | |||||| || || Sbjct 1552580 AGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGACAGGGTCCGGCTATCT 1552521 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||| ||| |||| |||||||||||||| || | |||||| || || Sbjct 1552520 TCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCTTTTTCC 1552461 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | | || |||||| ||||| ||||| || |||||| Sbjct 1552460 TGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGCTCCACCTCCACCGTGATGGTC 1552401 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 || || || | || || ||||| || ||||| || Sbjct 1552400 TTACCAGTGAGGGTCTTCACAAAGATCTGCATGTT 1552366 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || |||| |||| | || ||||| | ||||| ||||| | | Sbjct 1552822 CCACCTCTCAGACGCAGGACCAGGTGCAGGGGTGATTCCTTATCGATGTTGTAGTCGGAC 1552763 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || || |||||||||||||| ||| |||| |||||||||||||| || Sbjct 1552762 AGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGG 1552703 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||| || || |||||| ||||| | | ||||||||| ||||| Sbjct 1552702 ATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTATCACCGTGCTCCACC 1552643 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || |||||||| || || | || || ||||| || | ||| Sbjct 1552642 TCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTTCAT 1552596 >seq7633 Length=1847 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || || ||||| || |||| ||||| | |||||| || || ||||||||||| || Sbjct 1751 GTTGATTCCTTCTGGATGTCGTAGTCGGACAGGGTCCGGCTATCTTCCAGCTGTTTCCCA 1692 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| |||| || ||||||||||| || | |||||| ||||| |||||| |||| Sbjct 1691 GCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCCTGGATCTTAGCTTTC 1632 Query 21099 ACCTGGC-CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 | ||| | | | | ||| |||||||| |||| || |||||||| || || | || Sbjct 1631 A-CTGTCTCTATGTTGTCATCGGGCTCCACCTCCAGCGTGATGGTCTTACCAGTGAGGGT 1573 Query 21158 TTTGACAAATATTTGCA 21174 || || || || |||| Sbjct 1572 CTTCACGAAGATCTGCA 1556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422105917931060