Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq226 150 2e-31 seq2653 127 2e-24 seq558 120 3e-22 seq7633 113 5e-20 seq68 105 7e-18 seq33 102 8e-17 seq1233 95.1 1e-14 seq2815 89.7 5e-13 seq966 82.4 8e-11 >seq226 Length=808630 Score = 150 bits (166), Expect = 2e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| ||||| ||||||||| | || || || | Sbjct 361573 AAACATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCC 361632 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 || |||| | | ||| |||||| || || | ||||| || |||||||| | || Sbjct 361633 CAGTGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGA 361692 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | || |||| ||| ||||| |||||||| || | |||||||| |||||| Sbjct 361693 CCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTA 361752 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||||||| |||| || || || || |||| ||||||| || Sbjct 361753 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGTGG 361803 >seq2653 Length=13515 Score = 127 bits (140), Expect = 2e-24 Identities = 103/122 (84%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||||||| | ||| |||||||| | |||| || | |||||| | Sbjct 10914 AGGTGGACCTGTCCAAGGACCTGCAGC-ACTGGGAGTCCCTGAAGGATGAAGAGCGCTAC 10972 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 10973 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCAACGAGAACCTG 11032 Query 116804 GT 116805 || Sbjct 11033 GT 11034 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||| ||||| || || ||||| ||||||| || || |||||| Sbjct 11483 GGAGAGCGTTTGGTGGCGTTCGCTGCTGTGGAGGGGATCTTCTTCTCCGGTTCGTTCGCC 11542 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || ||| | ||||| || ||||| |||||||| ||||| ||||||||||||||| Sbjct 11543 TCCATCTTCTGGTTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTC 11602 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 11603 ATCAGCAGAGACGAGG 11618 Score = 107 bits (118), Expect = 2e-18 Identities = 95/117 (81%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||||||| |||||||||||||||| | ||||| |||| ||||||||||| || Sbjct 11103 GGTGGAGCGTTTCTCTCAGGAGGTGCAGGTCCCAGAGGCCAGGTGTTTCTACGGCTTCCA 11162 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 ||||||||| |||||| | ||||| || ||||| | || || |||||||| ||| Sbjct 11163 GATCGCCATAGAGAACATCCACTCTGAGATGTA--CAGCCTGCTGATCGACACCTAC 11217 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| || ||||| || || ||||| || |||||||| || |||| ||| Sbjct 10739 GAGCCGCTGCTGAAGGACAACCCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 10798 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| |||| ||||| || |||||||| || ||||||||| Sbjct 10799 ATCTGGCAGATGTACAAGCAGGCTGAGGCCTCCTTCTGGACGGTGGAGGAGGTG 10852 >seq558 Length=349536 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| ||||||| ||||| || || ||||| ||||||| || || |||||| Sbjct 123889 GGAGAGCGGGTGGTGGCGTTCGCTGCTGTGGAGGGGATCTTCTTCTCCGGTTCGTTCGCC 123830 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 |||| || ||| | ||||| || ||||| |||||||| ||||| ||||||||||||||| Sbjct 123829 TCCATCTTCTGGTTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTC 123770 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| ||||||| Sbjct 123769 ATCAGCAGAGACGAGG 123754 Score = 118 bits (130), Expect = 1e-21 Identities = 101/122 (83%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 116685 AGGTGGACCTGTCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCAT 116743 |||||||||||||||||||| | ||| |||||||| | |||| || | |||||| | Sbjct 127070 AGGTGGACCTGTCCAAGGACCTGCAGC-ACTGGGAGTCCCTGAAGGAAGAAGAGCGCTAC 127012 Query 116744 TTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTG 116803 |||||| |||||| ||||||| ||||||||||||||||| |||||||| ||||| ||| Sbjct 127011 TTCATCTCCCACGTGTTGGCCTTCTTCGCCGCCAGCGACGGTATCGTCAATGAGAACCTG 126952 Query 116804 GT 116805 || Sbjct 126951 GT 126950 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||| || ||||| || || ||||| || |||||||| || |||| ||| Sbjct 127260 GAGCCGCTGCTGAAGGACAACCCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 127201 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 127200 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTG 127147 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| | ||||| || |||||| | ||||| |||| ||||||||||| || Sbjct 126878 GGTGGAGCGCTTCACACAGGAAGTCCAGGTGACTGAGGCCAGGTGTTTCTACGGCTTCCA 126819 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTAC 116917 |||||||||||||||| | ||||| || ||||| | || || |||||||| ||| Sbjct 126818 GATCGCCATGGAGAACATCCACTCTGAGATGTA--CAGCCTGCTGATCGACACCTAC 126764 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 117275 TTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAA 117334 ||||| |||||||| ||||| ||| ||| | || | || || || | |||| ||| Sbjct 123506 TTCCTGACCGAAGCTCTGCCCGTGAAGCTGATCGGGATGAACTGTGACATGATGAAGCAG 123447 Query 117335 TACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCT 117372 |||||||||||||| ||||||||||||||||| ||||| Sbjct 123446 TACATCGAGTTCGTGGCCGACAGGCTGCTGCTGGAGCT 123409 >seq7633 Length=1847 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 |||| || ||||| || || ||||| || || |||||||| | || || || || | Sbjct 1556 TGCAGATCTTCGTGAAGACCCTCACTGGTAAGACCATCACGCTGGAGGTGGAGCCCGATG 1615 Query 40751 ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 ||| | | | || | || | || || | |||||||| |||||||| | ||||||| Sbjct 1616 ACAACATAGAGACAGTGAAAGCTAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGC 1675 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 | | || || | || || ||||||||||| || || ||||| ||||||| ||| Sbjct 1676 AGAGGCTGATTTTTGCTGGGAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTACGACA 1735 Query 40871 TCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||| | || || || || || |||| |||||||||||| Sbjct 1736 TCCAGAAGGAATCAACCCTCCACCTGGTCCTGCGTTTGAGGGGCGGC 1782 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 |||||||| |||||||| | |||||||| | || || | || || ||||||||||| Sbjct 1420 GACAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTGATTTTTGCTGGGAAACAGCTGGAA 1479 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || || ||||| |||||||||||||||||||| | || || || || || || Sbjct 1480 GATAGCCGGACCCTGTCAGACTACAACATCCAGAAGGAATCAACCCTCCACCTGGTCCTG 1539 Query 40903 CGCTTGAGGGGCGGCG 40918 || |||||||| |||| Sbjct 1540 CGTTTGAGGGGTGGCG 1555 >seq68 Length=2311667 Score = 105 bits (116), Expect = 7e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 ||| ||||| || || || || || ||||| || || |||||||| || || || || Sbjct 1552365 AAACATGCAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACGGTGGAGGTGGAGCA 1552424 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | || | |||| || || | || ||||| |||||||| | || Sbjct 1552425 CGGTGACACCATAGAGACCGTGAAGGCTAAGATCCAGGAAAAAGAAGGCATCCCTCCTGA 1552484 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| |||| || | || |||||||||||||| || || ||||| |||||| Sbjct 1552485 CCAGCAGAGACTGATTTTTGCTGGCAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTA 1552544 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||||| | ||||| | || ||||| || || |||| ||||| Sbjct 1552545 CAACATCGATAAGGAATCAACCCTGCACCTGGTCCTGCGTCTGAGG 1552590 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||| | || || || || || ||||| || || |||||||| || || || || | Sbjct 1552596 ATGAAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACGGTGGAGGTGGAGCACGGT 1552655 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | || | |||| || || | || ||||| |||||||| | |||||| Sbjct 1552656 GATACCATAGAGACCGTGAAGGCTAAGATCCAGGAAAAAGAAGGCATCCCTCCTGACCAG 1552715 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||| || | || |||||||||||||| || || ||||| |||||||||| Sbjct 1552716 CAGAGACTGATTTTTGCTGGCAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTACAAC 1552775 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||| | ||||| | | ||||| || || |||| |||| || ||| Sbjct 1552776 ATCGATAAGGAATCACCCCTGCACCTGGTCCTGCGTCTGAGAGGTGGC 1552823 >seq33 Length=3077319 Score = 102 bits (112), Expect = 8e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || ||||| || ||||| || || ||||| |||||| ||||||| || ||| || || Sbjct 3038969 GGGGAGCGACTTGTGGCTTTTGCAGCCGTGGAGGGCATCTTCTTCTCAGGCTCCTTTGCT 3039028 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 ||||| | |||||| ||||| | ||||||||||| |||||||| | | ||| || || Sbjct 3039029 GCCATCTATTGGCTAAAGAAGAGAGGCCTCATGCCTGGCCTGACCTACTCCAATGAACTG 3039088 Query 117152 ATCTCCAGGGACGAGG 117167 ||| |||||| |||| Sbjct 3039089 ATCAGCAGGGATGAGG 3039104 >seq1233 Length=91233 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| || |||||||| | |||||||| | || |||| || Sbjct 81376 TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGCTGATCTTCG 81317 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | |||| ||||| || || | |||||||| |||||||||||||||||||| | | | Sbjct 81316 CCAGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGTGTCAA 81257 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGG 40912 | || || || || |||| |||||| Sbjct 81256 CCCTTCACCTGGTCCTGCGTCTGAGGG 81230 >seq2815 Length=13304 Score = 89.7 bits (98), Expect = 5e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| || || ||||| | |||||||| | || |||| || Sbjct 2872 TCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGCAGAGGCTGATCTTCG 2931 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | |||| ||||| || || | |||||||| ||| |||||||||||||||| | | | Sbjct 2932 CCAGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGGTGTCAA 2991 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | || || || || |||| ||||||| ||| Sbjct 2992 CCCTTCACCTGGTCCTGCGTCTGAGGGGTGGC 3023 >seq966 Length=135400 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| || ||||||| | |||||||| | || |||| || Sbjct 102606 TCAAGGCCAAGATCCATGACAAGGAAGGCATCCTTCCTGACCAGCAGAGGCTGATCTTCG 102665 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | |||| ||||| || || | |||||||| |||||||||||||||||||| | ||| Sbjct 102666 CCAGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGTGTCCA 102725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515027377451600