Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq345 140 3e-28 seq226 118 9e-22 >seq345 Length=614307 Score = 140 bits (154), Expect = 3e-28 Identities = 497/765 (65%), Gaps = 40/765 (5%) Strand=Plus/Minus Query 133207 CTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATA 133266 |||||| |||| ||||||| | || ||||| |||| ||| || | | | || | Sbjct 404456 CTTTGAGCAGATGAGGGTTGACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGA 404397 Query 133267 CATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCG 133326 || ||| ||| |||| || ||||||||||| || ||||| || || | ||||| Sbjct 404396 TGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCG 404337 Query 133327 TGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCA 133386 ||||||| ||||| || || |||||| ||||||| |||| || || || || Sbjct 404336 TGGGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGCCGTGCTTGGCGATCTTCTCCTTCA 404277 Query 133387 ATTCGTTCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGT 133446 |||||||||||||| | || || ||| | ||| | ||| Sbjct 404276 GCAGCTTCCAGTCCCACAGGTC-----------AGTCGGCGTCTT----GTCCCACATGT 404232 Query 133447 GAAAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGA 133506 | |||| || |||||||| || || | | ||||| || ||||| || | Sbjct 404231 CGTACTGCAGGATGCCCCTGCTGACGGGCGAGCCTTCGTACGTCTCGTAGGGGCCC---A 404175 Query 133507 TTTTGGCC---AGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGAT-T 133562 ||||||| ||||||||||| ||||||| |||||| |||| ||||| || || | Sbjct 404174 GTTTGGCCGCGAGCTCGCAGCTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAACATCT 404115 Query 133563 GAATAGTTGACGAACCTG-GCATCGTCGCTATCGTAGGCG--ATG--TCGAGAAGAACAA 133617 | || ||||| | | ||| || || || || ||| | | | || ||| ||| Sbjct 404114 GGAT-GTTGA-GCAGCTGAGCCTCCGGACTTTCAAAGGGGTAACGCATCAAGATGAAG-- 404059 Query 133618 ACGCGTCGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCT 133677 ||||| || |||||||| | |||| ||||| || | || ||| ||| | ||| Sbjct 404058 --GCGTCTGCTAAACCCTGGACTCCGATTCCGATCGGCCTGTGGCGTTTGTTGGACATCT 404001 Query 133678 CCGACTCGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAA 133737 | | ||||| || |||| ||||| || ||||||||||| | || ||| || | Sbjct 404000 CGGCCTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTGTTCAAGTTTTTGACTATCA 403941 Query 133738 TTTTAGTCAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCG-TC-GACGTCGACGCA 133795 ||| |||| | | ||| | ||||| | || ||| || | ||| |||| | Sbjct 403940 CTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGT----GCGCTCAGGCGT-GACGTA 403886 Query 133796 CTTGTTGACGGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTG 133855 | |||||| || || || ||||| ||||| ||| ||||| || | || | Sbjct 403885 CATGTTGAGAGCGATGGATGCCAGATTGCAAACTGCCACCTCGTCGGCGCTGGTGTATTC 403826 Query 133856 GACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAA 133915 |||| ||| | ||| | ||||||||| ||||||||||||| ||| | || ||||| Sbjct 403825 CACGACCTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTT 403766 Query 133916 GTTATTGCAATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 | ||||| || ||||| | |||||||||| ||||| || Sbjct 403765 CCTGTTGCACGCGTCTTTGTACAACATGTACGGCGTTCCGGTCTC 403721 >seq226 Length=808630 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| || ||||| || || |||||||| ||| || ||||| ||| || Sbjct 361785 ACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 361726 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| || | |||||| || ||||| ||||| |||||||| Sbjct 361725 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGG 361666 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||| | |||||| || ||| ||||| | ||| | || ||| Sbjct 361665 ATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 361606 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || ||||||||||||||| Sbjct 361605 CCAGTGAGGGTCTTGACAAAAATCTGCATG 361576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433672917531220